Wall clock time and date at job start Mon Mar 30 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.52998 * 109.46895 * 240.00173 * 2 1 3 5 5 C 1.50700 * 109.47063 * 120.00095 * 2 1 3 6 6 N 1.30795 * 125.15463 * 59.97894 * 5 2 1 7 7 C 1.33329 * 109.25723 * 180.02562 * 6 5 2 8 8 C 1.39419 * 107.07770 * 0.02562 * 7 6 5 9 9 C 1.39853 * 126.87188 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99816 * 180.02562 * 9 8 7 11 11 C 1.40163 * 119.99599 * 0.30424 * 9 8 7 12 12 N 1.30794 * 120.00514 * 359.71996 * 11 9 8 13 13 Si 1.86801 * 119.99705 * 179.72074 * 11 9 8 14 14 H 1.48496 * 109.47377 * 60.00056 * 13 11 9 15 15 H 1.48497 * 109.47267 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99670 * 13 11 9 17 17 O 1.34016 * 125.15094 * 240.32745 * 5 2 1 18 18 H 1.09001 * 109.47112 * 299.99333 * 1 2 3 19 19 H 1.08995 * 109.47210 * 59.99818 * 1 2 3 20 20 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47095 * 180.02562 * 3 2 1 22 22 H 1.09005 * 109.47277 * 300.00118 * 3 2 1 23 23 H 1.09002 * 109.47342 * 60.00051 * 3 2 1 24 24 H 1.09003 * 109.47114 * 299.99773 * 4 2 1 25 25 H 1.09005 * 109.47203 * 59.99950 * 4 2 1 26 26 H 1.09000 * 109.47218 * 179.97438 * 4 2 1 27 27 H 1.07995 * 126.46223 * 180.02562 * 7 6 5 28 28 H 0.97000 * 120.00714 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7789 -1.9565 1.5368 7 6 2.3782 -2.2565 2.6895 8 6 3.0445 -1.1084 3.1155 9 6 3.8069 -0.9636 4.2790 10 1 4.2772 -0.0173 4.5021 11 6 3.9653 -2.0483 5.1525 12 7 3.3956 -3.1942 4.8823 13 14 4.9900 -1.8572 6.7026 14 1 4.4037 -0.7924 7.5555 15 1 5.0004 -3.1400 7.4504 16 1 6.3803 -1.4870 6.3345 17 8 2.8010 -0.1592 2.1799 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9564 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2073 -2.1393 26 1 3.1300 -0.7208 -1.2495 27 1 2.3523 -3.2093 3.1973 28 1 3.5050 -3.9448 5.4869 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074340324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:22 Heat of formation + Delta-G solvation = -15.142665 kcal Electronic energy + Delta-G solvation = -12292.371231 eV Core-core repulsion = 10115.843584 eV Total energy + Delta-G solvation = -2176.527647 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.96334 -36.09984 -33.93862 -32.56135 -28.77189 -26.76354 -26.75032 -25.02893 -21.21071 -20.57110 -18.27229 -17.49516 -15.56190 -14.95156 -14.74868 -13.71515 -13.54739 -13.30646 -12.71742 -12.03052 -11.82341 -11.73634 -11.55311 -11.36929 -11.18531 -10.71787 -10.58743 -10.49771 -10.33473 -10.17003 -9.58545 -9.35402 -8.60655 -7.23306 -6.86606 -4.48555 2.85059 2.99045 3.02714 3.41774 3.77478 4.47635 4.57163 5.17583 5.30613 5.53800 5.58685 5.92346 6.05236 6.07765 6.24941 6.29935 6.37927 6.47625 6.54181 6.84257 6.85973 6.93903 7.27984 7.53648 7.67074 8.24171 8.41816 8.63884 8.76861 9.83660 10.08895 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.073629 B = 0.009431 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.193453 B = 2968.194175 C = 3157.321926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 C -0.137 4.137 4 C -0.132 4.132 5 C 0.032 3.968 6 N -0.458 5.458 7 C -0.173 4.173 8 C 0.138 3.862 9 C -0.424 4.424 10 H 0.082 0.918 11 C 0.068 3.932 12 N -0.789 5.789 13 Si 0.940 3.060 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.263 1.263 17 O -0.241 6.241 18 H 0.051 0.949 19 H 0.052 0.948 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.191 0.809 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 4.083 -3.832 5.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 C -0.195 4.195 4 C -0.190 4.190 5 C -0.168 4.168 6 N -0.186 5.186 7 C -0.319 4.319 8 C 0.085 3.915 9 C -0.455 4.455 10 H 0.100 0.900 11 C -0.149 4.149 12 N -0.416 5.416 13 Si 0.763 3.237 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.188 1.188 17 O -0.132 6.132 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.208 0.792 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.288 3.526 -4.165 5.607 hybrid contribution 0.904 0.379 1.253 1.591 sum -0.384 3.905 -2.911 4.886 Atomic orbital electron populations 1.21829 0.94023 1.02383 1.00743 1.18414 0.94653 0.93288 0.88319 1.21783 1.01438 0.95055 1.01218 1.21827 1.00956 1.00841 0.95339 1.24499 1.05693 0.90629 0.95995 1.69509 1.20984 1.12613 1.15495 1.24133 1.09694 1.02011 0.96041 1.20710 0.96118 0.86018 0.88675 1.18315 1.26877 0.98968 1.01342 0.89954 1.25820 0.95384 0.93872 0.99849 1.69581 1.34430 1.02020 1.35597 0.85848 0.79999 0.78613 0.79217 1.18778 1.19946 1.18777 1.84306 1.57919 1.40855 1.30112 0.92961 0.92878 0.91874 0.92485 0.92735 0.92481 0.91869 0.92886 0.92954 0.79206 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.45 37.16 0.31 -1.94 15 2 C 0.05 1.05 0.99 -155.66 -0.15 0.89 15 3 C -0.14 -2.31 7.99 37.16 0.30 -2.02 15 4 C -0.13 -2.25 8.45 37.16 0.31 -1.94 15 5 C 0.03 0.80 6.44 -12.72 -0.08 0.72 15 6 N -0.46 -12.63 11.23 -10.03 -0.11 -12.74 15 7 C -0.17 -5.09 10.89 -16.46 -0.18 -5.27 15 8 C 0.14 4.03 7.08 -38.54 -0.27 3.76 15 9 C -0.42 -11.73 9.45 -38.26 -0.36 -12.10 15 10 H 0.08 2.15 7.85 -52.49 -0.41 1.73 15 11 C 0.07 1.73 5.50 -17.27 -0.09 1.63 15 12 N -0.79 -20.55 10.32 55.56 0.57 -19.97 15 13 Si 0.94 18.63 29.56 -169.99 -5.03 13.60 15 14 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 15 H -0.27 -5.23 7.11 56.52 0.40 -4.82 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 17 O -0.24 -6.68 10.17 3.10 0.03 -6.65 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.19 5.66 5.76 -52.49 -0.30 5.36 15 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 LS Contribution 243.04 15.07 3.66 3.66 Total: -1.00 -30.04 243.04 -4.74 -34.79 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.65 Total: 3.56 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.22 Total: -16.25 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.46 Total: -32.71 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.03 Total: -6.65 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.04 -4.74 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074340324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.645 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds