Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.52998 * 109.46895 * 240.00173 * 2 1 3 5 5 C 1.50700 * 109.47063 * 120.00095 * 2 1 3 6 6 N 1.30795 * 125.15463 * 59.97894 * 5 2 1 7 7 C 1.33329 * 109.25723 * 180.02562 * 6 5 2 8 8 C 1.39419 * 107.07770 * 0.02562 * 7 6 5 9 9 C 1.39853 * 126.87188 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99816 * 180.02562 * 9 8 7 11 11 C 1.40163 * 119.99599 * 0.30424 * 9 8 7 12 12 N 1.30794 * 120.00514 * 359.71996 * 11 9 8 13 13 Si 1.86801 * 119.99705 * 179.72074 * 11 9 8 14 14 H 1.48496 * 109.47377 * 60.00056 * 13 11 9 15 15 H 1.48497 * 109.47267 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99670 * 13 11 9 17 17 O 1.34016 * 125.15094 * 240.32745 * 5 2 1 18 18 H 1.09001 * 109.47112 * 299.99333 * 1 2 3 19 19 H 1.08995 * 109.47210 * 59.99818 * 1 2 3 20 20 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47095 * 180.02562 * 3 2 1 22 22 H 1.09005 * 109.47277 * 300.00118 * 3 2 1 23 23 H 1.09002 * 109.47342 * 60.00051 * 3 2 1 24 24 H 1.09003 * 109.47114 * 299.99773 * 4 2 1 25 25 H 1.09005 * 109.47203 * 59.99950 * 4 2 1 26 26 H 1.09000 * 109.47218 * 179.97438 * 4 2 1 27 27 H 1.07995 * 126.46223 * 180.02562 * 7 6 5 28 28 H 0.97000 * 120.00714 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7789 -1.9565 1.5368 7 6 2.3782 -2.2565 2.6895 8 6 3.0445 -1.1084 3.1155 9 6 3.8069 -0.9636 4.2790 10 1 4.2772 -0.0173 4.5021 11 6 3.9653 -2.0483 5.1525 12 7 3.3956 -3.1942 4.8823 13 14 4.9900 -1.8572 6.7026 14 1 4.4037 -0.7924 7.5555 15 1 5.0004 -3.1400 7.4504 16 1 6.3803 -1.4870 6.3345 17 8 2.8010 -0.1592 2.1799 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9564 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2073 -2.1393 26 1 3.1300 -0.7208 -1.2495 27 1 2.3523 -3.2093 3.1973 28 1 3.5050 -3.9448 5.4869 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074340324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = -36.202265 kcal Electronic energy + Delta-G solvation = -12293.284444 eV Core-core repulsion = 10115.843584 eV Total energy + Delta-G solvation = -2177.440860 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.06136 -37.63664 -35.94074 -34.67038 -30.85379 -28.12182 -28.11027 -27.04187 -23.07313 -22.71913 -20.10933 -19.50104 -17.52742 -16.80154 -16.60768 -15.36043 -15.27423 -14.79947 -14.47402 -14.03086 -13.39845 -13.14972 -12.99782 -12.99330 -12.57898 -12.55903 -12.21042 -11.97943 -11.96939 -11.76395 -11.51680 -11.36267 -10.75033 -9.36626 -8.80187 -6.60271 1.05909 1.35743 1.53139 1.63705 2.10012 2.41970 2.68235 3.06651 3.71280 4.08482 4.09418 4.35174 4.76487 4.79714 4.87226 4.88577 4.95953 5.00414 5.02213 5.18309 5.21892 5.37489 5.45887 5.50228 5.63845 6.16717 6.34250 6.48514 6.64887 7.70120 8.18160 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.073629 B = 0.009431 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.193453 B = 2968.194175 C = 3157.321926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.042 3.958 3 C -0.132 4.132 4 C -0.127 4.127 5 C 0.047 3.953 6 N -0.480 5.480 7 C -0.215 4.215 8 C 0.108 3.892 9 C -0.458 4.458 10 H 0.089 0.911 11 C 0.026 3.974 12 N -0.816 5.816 13 Si 1.023 2.977 14 H -0.255 1.255 15 H -0.259 1.259 16 H -0.255 1.255 17 O -0.254 6.254 18 H 0.041 0.959 19 H 0.100 0.900 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.100 0.900 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.178 0.822 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 5.301 -4.146 6.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.041 3.959 3 C -0.189 4.189 4 C -0.184 4.184 5 C -0.155 4.155 6 N -0.208 5.208 7 C -0.358 4.358 8 C 0.055 3.945 9 C -0.487 4.487 10 H 0.108 0.892 11 C -0.189 4.189 12 N -0.443 5.443 13 Si 0.840 3.160 14 H -0.178 1.178 15 H -0.182 1.182 16 H -0.179 1.179 17 O -0.147 6.147 18 H 0.060 0.940 19 H 0.119 0.881 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.119 0.881 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.195 0.805 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.057 4.709 -4.485 6.588 hybrid contribution 0.771 0.006 1.257 1.475 sum -0.286 4.714 -3.228 5.721 Atomic orbital electron populations 1.21806 0.92055 1.01958 1.02608 1.18961 0.96225 0.94455 0.86237 1.21773 1.00763 0.93447 1.02966 1.21804 1.00351 1.00291 0.95972 1.26071 1.02782 0.90287 0.96353 1.69479 1.21978 1.14035 1.15334 1.23991 1.12136 1.02097 0.97538 1.21187 0.97141 0.86398 0.89757 1.18818 1.27688 1.00419 1.01822 0.89249 1.27069 0.96064 0.92697 1.03082 1.69638 1.34604 1.02982 1.37045 0.84650 0.77942 0.79400 0.73985 1.17850 1.18236 1.17852 1.84319 1.58682 1.41049 1.30614 0.93973 0.88113 0.93483 0.93587 0.88104 0.93594 0.93477 0.88121 0.93954 0.80508 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.45 71.98 0.61 -3.42 15 2 C 0.04 1.56 0.99 -52.93 -0.05 1.51 15 3 C -0.13 -4.11 7.99 71.98 0.58 -3.53 15 4 C -0.13 -4.03 8.45 71.98 0.61 -3.42 15 5 C 0.05 2.43 6.44 88.26 0.57 3.00 15 6 N -0.48 -27.43 11.23 -300.13 -3.37 -30.80 15 7 C -0.21 -13.23 10.89 84.75 0.92 -12.31 15 8 C 0.11 6.56 7.08 22.95 0.16 6.72 15 9 C -0.46 -25.98 9.45 23.13 0.22 -25.76 15 10 H 0.09 4.75 7.85 -2.91 -0.02 4.73 15 11 C 0.03 1.32 5.50 85.32 0.47 1.78 15 12 N -0.82 -43.37 10.32 21.87 0.23 -43.14 15 13 Si 1.02 37.36 29.56 68.60 2.03 39.39 15 14 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 15 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 16 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 17 O -0.25 -14.54 10.17 -11.83 -0.12 -14.66 15 18 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 19 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.05 1.63 8.14 -2.39 -0.02 1.62 15 21 H 0.04 1.51 8.14 -2.39 -0.02 1.50 15 22 H 0.10 2.21 8.14 -2.38 -0.02 2.19 15 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.10 2.26 8.14 -2.38 -0.02 2.24 15 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.18 11.17 5.76 -2.91 -0.02 11.15 15 28 H 0.30 13.93 8.30 -92.71 -0.77 13.16 15 Total: -1.00 -68.32 243.04 3.98 -64.34 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.14 Total: 20.30 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 4.08 Total: -35.43 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -3.14 Total: -73.95 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.12 Total: -14.66 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -68.32 3.98 -64.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074340324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.137 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds