Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 N 1.30801 * 125.14984 * 89.69520 * 5 4 2 7 7 C 1.33336 * 109.25081 * 179.88851 * 6 5 4 8 8 C 1.39416 * 107.08120 * 0.36826 * 7 6 5 9 9 C 1.39844 * 126.87125 * 179.81467 * 8 7 6 10 10 H 1.08002 * 120.00306 * 179.97438 * 9 8 7 11 11 C 1.40169 * 120.00312 * 359.95625 * 9 8 7 12 12 N 1.30804 * 119.99723 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00443 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46824 * 60.00040 * 13 11 9 15 15 H 1.48499 * 109.47209 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47298 * 300.00185 * 13 11 9 17 17 O 1.34010 * 125.15519 * 270.00315 * 5 4 2 18 18 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 20 20 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 21 21 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 22 22 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 24 24 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 25 25 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 26 26 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 27 27 H 1.08002 * 126.45565 * 180.10489 * 7 6 5 28 28 H 0.96996 * 120.00126 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 7 2.3534 -3.1279 0.6477 7 6 1.7040 -4.2857 0.7729 8 6 0.5056 -4.0139 1.4314 9 6 -0.4918 -4.9331 1.7721 10 1 -1.3814 -4.5991 2.2854 11 6 -0.3372 -6.2877 1.4471 12 7 0.7404 -6.6923 0.8256 13 14 -1.6691 -7.5156 1.9028 14 1 -2.9430 -7.1316 1.2431 15 1 -1.2675 -8.8720 1.4509 16 1 -1.8560 -7.5192 3.3759 17 8 0.5010 -2.6814 1.6760 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9562 0.8901 25 1 1.6055 -0.2619 2.1369 26 1 3.1264 -0.6444 1.2950 27 1 2.0408 -5.2513 0.4255 28 1 0.8473 -7.6297 0.6004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074340327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = -40.321828 kcal Electronic energy + Delta-G solvation = -12103.466772 eV Core-core repulsion = 9925.847275 eV Total energy + Delta-G solvation = -2177.619497 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.03713 -37.30795 -35.96575 -34.74944 -31.39215 -29.22190 -27.97607 -25.82407 -22.85943 -21.94749 -20.72779 -19.58942 -17.58729 -16.86875 -16.62994 -15.64826 -15.04827 -15.02079 -14.68797 -14.02936 -13.58436 -13.07338 -13.04306 -12.94714 -12.73403 -12.49916 -12.10244 -12.02153 -11.79473 -11.56062 -11.50623 -11.34897 -10.80056 -9.36607 -8.80348 -6.60741 1.04904 1.36114 1.53532 1.63213 2.10295 2.39339 2.73143 3.06358 3.83127 4.01818 4.08226 4.36523 4.62898 4.73891 4.82014 4.87738 4.93504 5.05263 5.10484 5.18074 5.25231 5.41171 5.43630 5.52434 5.60881 6.16373 6.33515 6.47327 6.64293 7.68344 8.17907 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.075723 B = 0.008642 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.678498 B = 3239.181113 C = 3445.564425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.134 4.134 4 C 0.007 3.993 5 C 0.042 3.958 6 N -0.488 5.488 7 C -0.215 4.215 8 C 0.110 3.890 9 C -0.457 4.457 10 H 0.090 0.910 11 C 0.026 3.974 12 N -0.815 5.815 13 Si 1.023 2.977 14 H -0.255 1.255 15 H -0.259 1.259 16 H -0.254 1.254 17 O -0.253 6.253 18 H 0.016 0.984 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.179 0.821 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 7.030 0.254 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.191 4.191 4 C -0.031 4.031 5 C -0.160 4.160 6 N -0.216 5.216 7 C -0.358 4.358 8 C 0.057 3.943 9 C -0.486 4.486 10 H 0.108 0.892 11 C -0.189 4.189 12 N -0.442 5.442 13 Si 0.840 3.160 14 H -0.179 1.179 15 H -0.183 1.183 16 H -0.178 1.178 17 O -0.146 6.146 18 H 0.036 0.964 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.195 0.805 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.519 7.006 -0.112 7.170 hybrid contribution -0.885 -1.003 0.309 1.373 sum -2.404 6.003 0.197 6.470 Atomic orbital electron populations 1.21794 0.95467 1.00079 1.02494 1.21122 0.95941 0.97451 0.96446 1.21749 1.01433 0.92931 1.02976 1.19946 1.01529 0.81666 0.99920 1.26020 0.84684 0.98436 1.06821 1.69541 1.32745 1.00440 1.18907 1.23991 0.96764 0.96761 1.18310 1.21174 0.97433 0.79288 0.96355 1.18827 1.03099 0.91540 1.35145 0.89160 1.27077 0.99587 1.00024 0.92225 1.69641 1.26783 1.19382 1.28354 0.84649 0.76298 0.75122 0.79908 1.17871 1.18253 1.17813 1.84328 1.40693 1.22569 1.66969 0.96441 0.91536 0.91210 0.93169 0.91749 0.91357 0.91225 0.89223 0.88636 0.80456 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.01 71.98 0.65 -3.89 15 2 C -0.09 -2.84 2.91 -10.79 -0.03 -2.87 15 3 C -0.13 -2.90 9.19 71.98 0.66 -2.24 15 4 C 0.01 0.27 5.32 29.85 0.16 0.43 15 5 C 0.04 2.17 6.72 88.26 0.59 2.76 15 6 N -0.49 -28.04 11.23 -300.13 -3.37 -31.41 15 7 C -0.22 -13.26 10.89 84.75 0.92 -12.34 15 8 C 0.11 6.67 7.08 22.94 0.16 6.83 15 9 C -0.46 -25.75 9.45 23.13 0.22 -25.53 15 10 H 0.09 4.76 7.85 -2.91 -0.02 4.74 15 11 C 0.03 1.32 5.50 85.31 0.47 1.79 15 12 N -0.82 -43.11 10.32 21.87 0.23 -42.88 15 13 Si 1.02 37.14 29.56 68.60 2.03 39.17 15 14 H -0.25 -8.88 7.11 99.48 0.71 -8.17 15 15 H -0.26 -8.66 7.11 99.48 0.71 -7.96 15 16 H -0.25 -8.85 7.11 99.48 0.71 -8.14 15 17 O -0.25 -14.34 10.20 -11.78 -0.12 -14.47 15 18 H 0.02 0.69 6.89 -2.39 -0.02 0.67 15 19 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.09 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.10 3.20 8.14 -2.39 -0.02 3.18 15 27 H 0.18 11.18 5.76 -2.91 -0.02 11.17 15 28 H 0.30 13.87 8.30 -92.71 -0.77 13.10 15 Total: -1.00 -67.54 242.62 3.71 -63.83 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.14 Total: 20.82 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.80 Total: -35.06 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -3.15 Total: -74.29 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.12 Total: -14.47 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -67.54 3.71 -63.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074340327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.508 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds