Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31325 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47085 * 270.27606 * 3 2 1 5 5 H 1.48497 * 109.46789 * 30.27616 * 3 2 1 6 6 H 1.48495 * 109.47179 * 150.27409 * 3 2 1 7 7 C 1.39105 * 120.00129 * 180.27909 * 2 1 3 8 8 H 1.08000 * 119.99391 * 359.72077 * 7 2 1 9 9 N 1.36600 * 120.00045 * 179.72670 * 7 2 1 10 10 C 1.36325 * 119.99950 * 179.97438 * 9 7 2 11 11 C 1.35673 * 120.00063 * 179.97438 * 10 9 7 12 12 C 1.50224 * 118.62492 * 359.97438 * 11 10 9 13 13 C 1.52954 * 110.04967 * 162.03132 * 12 11 10 14 14 C 1.53246 * 108.80610 * 51.00174 * 13 12 11 15 15 C 1.52960 * 108.79933 * 289.89394 * 14 13 12 16 16 C 1.39248 * 118.62389 * 179.73558 * 11 10 9 17 17 O 1.21548 * 118.62223 * 1.23123 * 16 11 10 18 18 H 0.97000 * 120.00249 * 359.72564 * 1 2 3 19 19 H 0.97005 * 120.00166 * 359.97438 * 9 7 2 20 20 H 1.08005 * 119.99947 * 0.02562 * 10 9 7 21 21 H 1.08995 * 109.37357 * 282.21507 * 12 11 10 22 22 H 1.08998 * 109.37102 * 41.85831 * 12 11 10 23 23 H 1.09005 * 109.57750 * 170.79238 * 13 12 11 24 24 H 1.08996 * 109.59075 * 291.06407 * 13 12 11 25 25 H 1.09002 * 109.57889 * 49.68409 * 14 13 12 26 26 H 1.08998 * 109.58337 * 170.09453 * 14 13 12 27 27 H 1.09003 * 109.37120 * 171.17197 * 15 14 13 28 28 H 1.09000 * 109.37166 * 290.81189 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4890 2.0498 -1.4001 5 1 1.4477 2.6509 0.7059 6 1 3.5477 1.4385 0.6942 7 6 2.0088 -1.2047 -0.0059 8 1 1.4687 -2.1399 -0.0059 9 7 3.3748 -1.2046 -0.0115 10 6 4.0564 -2.3852 -0.0167 11 6 5.4131 -2.3852 -0.0229 12 6 6.1328 -1.0665 -0.0243 13 6 7.5857 -1.2616 0.4121 14 6 8.2064 -2.3853 -0.4249 15 6 7.5784 -3.7159 -0.0068 16 6 6.0802 -3.6075 -0.0225 17 8 5.4228 -4.6296 -0.0395 18 1 -0.4850 0.8400 0.0040 19 1 3.8598 -0.3645 -0.0118 20 1 3.5164 -3.3206 -0.0168 21 1 6.1105 -0.6436 -1.0286 22 1 5.6369 -0.3833 0.6650 23 1 8.1420 -0.3378 0.2532 24 1 7.6172 -1.5299 1.4681 25 1 8.0099 -2.2047 -1.4818 26 1 9.2820 -2.4185 -0.2517 27 1 7.8940 -4.4976 -0.6977 28 1 7.9085 -3.9709 1.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075546215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -58.679901 kcal Electronic energy + Delta-G solvation = -12090.208964 eV Core-core repulsion = 9911.793400 eV Total energy + Delta-G solvation = -2178.415563 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.75294 -38.45245 -36.68392 -34.67545 -32.07936 -29.94067 -27.14038 -25.33885 -22.73846 -22.17658 -20.68288 -18.48181 -17.44217 -17.08014 -15.98795 -15.95499 -15.21904 -15.06857 -14.74225 -14.38396 -14.15879 -13.77001 -13.68456 -12.88965 -12.69911 -12.60583 -12.31352 -12.14901 -11.72605 -11.55318 -11.25367 -11.01006 -9.96224 -8.85862 -8.70916 -6.09593 0.61025 1.22121 1.29777 1.31891 2.02692 2.45978 2.93066 2.94364 3.93155 4.08623 4.16272 4.34905 4.43415 4.73857 4.78834 4.84938 5.05970 5.10833 5.12112 5.21704 5.28667 5.42597 5.58096 5.64086 5.75036 6.06754 6.38922 7.03272 7.07396 7.41290 8.42797 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.051661 B = 0.010173 C = 0.008626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.867869 B = 2751.817746 C = 3245.308333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.243 1.243 7 C -0.352 4.352 8 H 0.084 0.916 9 N -0.527 5.527 10 C 0.212 3.788 11 C -0.449 4.449 12 C -0.045 4.045 13 C -0.110 4.110 14 C -0.104 4.104 15 C -0.151 4.151 16 C 0.389 3.611 17 O -0.606 6.606 18 H 0.289 0.711 19 H 0.392 0.608 20 H 0.121 0.879 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.696 3.983 0.101 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.198 4.198 3 Si 0.765 3.235 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.166 1.166 7 C -0.481 4.481 8 H 0.102 0.898 9 N -0.128 5.128 10 C 0.061 3.939 11 C -0.462 4.462 12 C -0.082 4.082 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.189 4.189 16 C 0.284 3.716 17 O -0.498 6.498 18 H 0.100 0.900 19 H 0.230 0.770 20 H 0.139 0.861 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.845 3.702 0.091 13.369 hybrid contribution -0.403 0.632 0.035 0.750 sum 12.442 4.334 0.126 13.176 Atomic orbital electron populations 1.69679 1.07752 1.30345 1.45422 1.26014 0.96429 1.02482 0.94914 0.85612 0.79568 0.77759 0.80551 1.17629 1.18583 1.16639 1.19495 0.80539 0.96375 1.51674 0.89815 1.40986 1.05836 1.06516 1.59417 1.21635 0.93198 0.88873 0.90188 1.19188 0.92072 0.97227 1.37725 1.19816 0.96015 0.92972 0.99402 1.21490 0.94249 0.99287 0.99755 1.21453 1.00124 0.92653 0.99915 1.21755 0.93445 1.00137 1.03541 1.19939 0.91949 0.87539 0.72130 1.90466 1.70097 1.39849 1.49402 0.90048 0.77032 0.86131 0.93195 0.94258 0.89901 0.92044 0.91988 0.89179 0.89888 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.46 13.95 21.69 0.30 -48.16 15 2 C 0.01 0.31 5.50 84.98 0.47 0.78 15 3 Si 0.95 36.22 27.74 68.60 1.90 38.12 15 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 15 5 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 6 H -0.24 -8.41 6.52 99.48 0.65 -7.76 15 7 C -0.35 -18.32 10.36 84.16 0.87 -17.45 15 8 H 0.08 4.83 8.04 -2.91 -0.02 4.81 15 9 N -0.53 -23.85 5.00 -190.58 -0.95 -24.80 15 10 C 0.21 9.55 9.78 83.40 0.82 10.37 15 11 C -0.45 -18.04 5.67 -20.37 -0.12 -18.15 15 12 C -0.04 -1.44 4.90 29.68 0.15 -1.30 15 13 C -0.11 -2.74 5.95 30.66 0.18 -2.56 15 14 C -0.10 -2.44 5.95 30.66 0.18 -2.25 15 15 C -0.15 -4.45 6.00 29.68 0.18 -4.27 15 16 C 0.39 15.77 6.73 25.78 0.17 15.94 15 17 O -0.61 -29.64 16.49 -3.87 -0.06 -29.70 15 18 H 0.29 14.23 8.31 -92.71 -0.77 13.46 15 19 H 0.39 15.97 3.70 -92.70 -0.34 15.63 15 20 H 0.12 5.90 7.23 -2.91 -0.02 5.88 15 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.04 1.28 6.99 -2.39 -0.02 1.26 15 23 H 0.08 1.63 8.14 -2.38 -0.02 1.61 15 24 H 0.06 1.52 8.11 -2.39 -0.02 1.50 15 25 H 0.06 1.48 8.10 -2.39 -0.02 1.46 15 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 Total: -1.00 -60.12 235.95 4.84 -55.28 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.75 Total: 28.15 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 2.90 Total: -18.89 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -0.65 Total: -72.95 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.70 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 1.90 Total: 38.12 kcal Total: -60.12 4.84 -55.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.402 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds