Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34510 * 125.78812 * 2 1 4 4 C 1.41386 * 106.84074 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.84053 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.79148 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46939 * 269.99748 * 6 5 4 8 8 N 1.46903 * 109.47289 * 29.99463 * 6 5 4 9 9 C 1.50694 * 109.47166 * 149.99770 * 6 5 4 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 6 5 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 6 14 14 H 1.48498 * 109.47200 * 59.99994 * 13 11 9 15 15 H 1.48498 * 109.46671 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47156 * 300.00008 * 13 11 9 17 17 O 1.34302 * 125.79025 * 180.34006 * 2 1 3 18 18 H 1.09002 * 109.47220 * 90.00263 * 1 2 3 19 19 H 1.09000 * 109.47410 * 210.00505 * 1 2 3 20 20 H 1.09005 * 109.47286 * 330.00470 * 1 2 3 21 21 H 1.08001 * 126.58418 * 0.02562 * 3 2 1 22 22 H 1.08004 * 126.58269 * 180.02562 * 4 3 2 23 23 H 1.09000 * 109.47156 * 300.00240 * 7 6 5 24 24 H 1.08998 * 109.47223 * 59.99732 * 7 6 5 25 25 H 1.08995 * 109.47095 * 179.97438 * 7 6 5 26 26 H 1.00896 * 110.99814 * 296.05491 * 8 6 5 27 27 H 1.00904 * 110.99282 * 60.00362 * 8 6 5 28 28 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 6 5.1728 -1.9514 -1.4428 8 7 5.8939 -0.9920 0.6919 9 6 4.4112 -2.9172 0.7104 10 1 3.4209 -3.0470 1.1214 11 6 5.3468 -3.9223 0.8360 12 7 6.5529 -3.7642 0.3361 13 14 4.9037 -5.5051 1.7237 14 1 3.7652 -6.1594 1.0304 15 1 6.0748 -6.4182 1.7215 16 1 4.5188 -5.1961 3.1243 17 8 2.2924 -1.0894 -0.0065 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8901 0.5138 21 1 1.9665 2.1204 0.0004 22 1 4.5213 1.2433 -0.0004 23 1 4.3394 -2.4306 -1.9564 24 1 5.4327 -1.0261 -1.9568 25 1 6.0332 -2.6206 -1.4427 26 1 6.1957 -0.1655 0.1982 27 1 5.6529 -0.7748 1.6474 28 1 7.2109 -4.4714 0.4241 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330186.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = 11.052219 kcal Electronic energy + Delta-G solvation = -12436.742514 eV Core-core repulsion = 10261.350762 eV Total energy + Delta-G solvation = -2175.391751 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.76089 -35.66356 -32.47455 -31.83912 -30.43078 -27.69723 -25.51982 -25.11862 -21.31878 -20.36459 -18.98937 -16.46590 -15.75395 -15.30759 -14.51628 -14.09637 -13.63466 -13.08199 -12.78049 -12.63756 -12.30189 -11.98219 -11.50823 -11.26279 -10.84943 -10.78716 -10.53054 -10.32444 -9.84272 -9.20274 -9.02659 -8.40649 -7.59378 -7.23191 -5.87771 -4.04803 2.53813 3.33563 3.36794 3.39991 3.44190 3.78576 4.46940 5.30382 5.32782 5.59467 5.66075 5.70291 5.85132 5.97752 6.08254 6.51192 6.59056 6.76864 6.96746 7.01178 7.18803 7.25787 7.79744 7.89164 7.98424 8.29814 8.59347 8.90399 9.06064 9.63727 11.12704 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.043427 B = 0.012401 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.610133 B = 2257.275504 C = 2671.845006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.057 4.057 3 C -0.210 4.210 4 C -0.266 4.266 5 C 0.031 3.969 6 C 0.310 3.690 7 C -0.122 4.122 8 N -0.789 5.789 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.086 3.914 12 N -0.846 5.846 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.278 1.278 17 O -0.160 6.160 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.133 0.867 22 H 0.134 0.866 23 H 0.034 0.966 24 H 0.011 0.989 25 H 0.100 0.900 26 H 0.301 0.699 27 H 0.324 0.676 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 6.202 -0.911 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C -0.229 4.229 4 C -0.285 4.285 5 C -0.023 4.023 6 C 0.218 3.782 7 C -0.180 4.180 8 N -0.316 5.316 9 C -0.567 4.567 10 H 0.075 0.925 11 C -0.120 4.120 12 N -0.481 5.481 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 O -0.055 6.055 18 H 0.090 0.910 19 H 0.089 0.911 20 H 0.096 0.904 21 H 0.151 0.849 22 H 0.152 0.848 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.108 5.125 -1.079 8.046 hybrid contribution -0.829 0.383 0.641 1.116 sum -6.938 5.508 -0.438 8.869 Atomic orbital electron populations 1.20126 0.86352 1.03108 1.02539 1.22292 0.93848 0.85269 1.09348 1.21344 0.93201 0.98360 1.10022 1.21381 0.97335 0.94576 1.15247 1.25364 0.84079 0.95449 0.97447 1.17325 0.78203 0.89133 0.93567 1.21761 1.02797 0.99382 0.94036 1.59392 1.37653 1.29939 1.04583 1.20772 0.98459 0.98475 1.39017 0.92475 1.24891 0.94733 0.97718 0.94708 1.70000 1.03269 1.32056 1.42740 0.86752 0.77791 0.83455 0.80439 1.20329 1.21258 1.20346 1.84104 1.17014 1.33979 1.70362 0.91045 0.91081 0.90360 0.84871 0.84798 0.94706 0.97023 0.88118 0.88737 0.86367 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.42 36.01 0.38 -0.49 15 2 C -0.06 -1.09 7.32 -35.63 -0.26 -1.35 15 3 C -0.21 -3.87 10.81 -39.70 -0.43 -4.30 15 4 C -0.27 -5.44 10.18 -39.70 -0.40 -5.84 15 5 C 0.03 0.72 5.82 -35.62 -0.21 0.52 15 6 C 0.31 7.74 0.77 -133.91 -0.10 7.64 15 7 C -0.12 -2.99 8.49 37.16 0.32 -2.67 15 8 N -0.79 -18.43 7.93 -1.14 -0.01 -18.44 15 9 C -0.53 -14.65 8.06 -34.44 -0.28 -14.93 15 10 H 0.06 1.63 7.35 -52.49 -0.39 1.25 15 11 C 0.09 2.36 5.23 -17.82 -0.09 2.27 15 12 N -0.85 -23.63 10.80 55.43 0.60 -23.03 15 13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 15 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 O -0.16 -3.72 10.01 5.71 0.06 -3.66 15 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 22 H 0.13 2.48 7.50 -52.48 -0.39 2.08 15 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 25 H 0.10 2.67 6.07 -51.93 -0.32 2.36 15 26 H 0.30 6.27 8.14 -39.29 -0.32 5.95 15 27 H 0.32 7.40 8.98 -39.29 -0.35 7.04 15 28 H 0.26 6.91 8.31 -40.82 -0.34 6.58 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -29.57 241.82 -5.25 -34.82 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.44 Total: 9.54 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.08 Total: -19.16 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.59 Total: -41.47 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.06 Total: -3.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.57 -5.25 -34.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330186.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.872 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds