Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34472 * 126.16867 * 2 1 4 4 C 1.30253 * 108.70188 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.62146 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47302 * 0.02562 * 5 4 3 7 7 C 1.53003 * 109.47024 * 119.99835 * 5 4 3 8 8 C 1.50697 * 109.47677 * 239.99972 * 5 4 3 9 9 H 1.08010 * 119.99686 * 354.48918 * 8 5 4 10 10 C 1.37873 * 120.00423 * 174.48507 * 8 5 4 11 11 N 1.31521 * 120.00119 * 164.76680 * 10 8 5 12 12 Si 1.86801 * 119.99936 * 344.76863 * 10 8 5 13 13 H 1.48502 * 109.47081 * 269.99970 * 12 10 8 14 14 H 1.48502 * 109.47117 * 30.00017 * 12 10 8 15 15 H 1.48497 * 109.46940 * 149.99925 * 12 10 8 16 16 O 1.33970 * 108.76278 * 0.22791 * 4 3 2 17 17 C 1.34333 * 126.16124 * 180.02562 * 2 1 3 18 18 C 1.50703 * 126.44370 * 359.97438 * 17 2 1 19 19 H 1.08995 * 109.47174 * 89.96991 * 1 2 3 20 20 H 1.08998 * 109.47014 * 209.97743 * 1 2 3 21 21 H 1.09007 * 109.46766 * 329.97375 * 1 2 3 22 22 H 1.08996 * 109.47282 * 293.65105 * 7 5 4 23 23 H 1.09004 * 109.47219 * 53.65552 * 7 5 4 24 24 H 1.09000 * 109.47105 * 173.64614 * 7 5 4 25 25 H 0.96999 * 119.99919 * 354.90904 * 11 10 8 26 26 H 1.08996 * 109.47217 * 90.00553 * 18 17 2 27 27 H 1.09007 * 109.46950 * 210.00397 * 18 17 2 28 28 H 1.09002 * 109.47192 * 329.99804 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6946 -0.0006 5 6 4.7480 1.5997 -0.0013 6 1 4.4214 2.6396 -0.0008 7 6 5.5896 1.3295 1.2476 8 6 5.5758 1.3333 -1.2321 9 1 5.3104 0.5242 -1.8966 10 6 6.6718 2.1222 -1.5098 11 7 7.5610 1.7249 -2.3937 12 14 6.8939 3.7554 -0.6308 13 1 6.2326 4.8317 -1.4115 14 1 6.2831 3.6773 0.7205 15 1 8.3426 4.0555 -0.5025 16 8 3.5734 -0.6447 -0.0060 17 6 2.2997 -1.0845 -0.0005 18 6 1.8491 -2.5227 -0.0006 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5143 22 1 5.0306 1.6289 2.1342 23 1 5.8217 0.2661 1.3063 24 1 6.5161 1.9010 1.1920 25 1 7.4858 0.8453 -2.7957 26 1 1.7402 -2.8692 -1.0282 27 1 2.5900 -3.1355 0.5130 28 1 0.8914 -2.6034 0.5136 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330192.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -22.990697 kcal Electronic energy + Delta-G solvation = -12214.137608 eV Core-core repulsion = 10037.269645 eV Total energy + Delta-G solvation = -2176.867963 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.24239 -36.74992 -36.08963 -34.18136 -32.77177 -30.00847 -27.11511 -26.53609 -23.77306 -22.40498 -21.10470 -19.63643 -17.70299 -17.38975 -16.41685 -15.44264 -15.08867 -14.75493 -14.36599 -14.22170 -14.06755 -13.81466 -13.33622 -13.12991 -13.08251 -12.79918 -12.45219 -12.07176 -11.86744 -11.45059 -11.42116 -11.11410 -10.61314 -9.40960 -8.83218 -6.52077 0.55281 1.50404 1.54788 1.71892 1.73835 1.93665 2.47236 2.96989 3.21984 3.88329 3.95288 4.32217 4.37334 4.56892 4.59406 4.60058 4.76115 4.79789 4.90434 4.93745 5.00774 5.22433 5.23114 5.41589 5.49425 5.74690 5.89979 6.37624 6.89938 7.25866 8.51871 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.055239 B = 0.010320 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.768378 B = 2712.636896 C = 2877.910586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.041 4.041 3 N -0.527 5.527 4 C 0.221 3.779 5 C 0.100 3.900 6 H 0.070 0.930 7 C -0.137 4.137 8 C -0.609 4.609 9 H 0.010 0.990 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 1.082 2.918 13 H -0.272 1.272 14 H -0.229 1.229 15 H -0.277 1.277 16 O -0.220 6.220 17 C -0.092 4.092 18 C -0.057 4.057 19 H 0.080 0.920 20 H 0.105 0.895 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.253 0.747 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -4.568 8.073 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.160 4.160 3 N -0.258 5.258 4 C 0.015 3.985 5 C 0.080 3.920 6 H 0.087 0.913 7 C -0.195 4.195 8 C -0.647 4.647 9 H 0.029 0.971 10 C -0.207 4.207 11 N -0.561 5.561 12 Si 0.900 3.100 13 H -0.197 1.197 14 H -0.152 1.152 15 H -0.203 1.203 16 O -0.108 6.108 17 C -0.144 4.144 18 C -0.113 4.113 19 H 0.099 0.901 20 H 0.124 0.876 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.973 -2.672 8.137 13.920 hybrid contribution -0.341 -2.320 -0.889 2.508 sum -11.314 -4.993 7.248 14.334 Atomic orbital electron populations 1.20209 0.83430 1.04482 1.03540 1.22331 0.99853 0.87399 1.06450 1.70363 1.00985 1.32726 1.21700 1.26824 0.95590 0.79135 0.96943 1.17851 0.85652 0.92245 0.96219 0.91261 1.22100 1.00100 1.01334 0.95991 1.21893 1.14352 1.18722 1.09697 0.97147 1.27365 0.90729 1.06424 0.96168 1.70939 1.35055 1.20977 1.29115 0.83700 0.77462 0.71096 0.77742 1.19741 1.15218 1.20255 1.84399 1.31598 1.24731 1.70022 1.24193 0.80329 1.00513 1.09352 1.20426 1.02976 0.83333 1.04553 0.90142 0.87640 0.90870 0.92063 0.93878 0.91370 0.93765 0.89165 0.90193 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.44 10.22 71.24 0.73 -0.71 15 2 C -0.04 -1.52 7.11 41.26 0.29 -1.23 15 3 N -0.53 -24.27 11.29 -291.98 -3.30 -27.57 15 4 C 0.22 10.89 6.79 88.34 0.60 11.49 15 5 C 0.10 5.04 2.32 -12.29 -0.03 5.01 15 6 H 0.07 3.38 6.78 -2.39 -0.02 3.36 15 7 C -0.14 -5.94 8.46 71.98 0.61 -5.33 15 8 C -0.61 -36.09 8.83 25.60 0.23 -35.87 15 9 H 0.01 0.68 7.99 -2.91 -0.02 0.66 15 10 C -0.01 -0.46 5.33 84.65 0.45 -0.01 15 11 N -0.93 -58.24 13.70 21.45 0.29 -57.95 15 12 Si 1.08 48.42 26.17 68.60 1.80 50.22 15 13 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 14 H -0.23 -8.78 5.54 99.48 0.55 -8.23 15 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 16 O -0.22 -10.33 10.78 -3.77 -0.04 -10.37 15 17 C -0.09 -3.34 7.39 24.79 0.18 -3.16 15 18 C -0.06 -1.27 10.22 71.24 0.73 -0.54 15 19 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.11 1.72 7.16 -2.39 -0.02 1.70 15 21 H 0.07 1.74 8.14 -2.38 -0.02 1.72 15 22 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.04 1.88 8.14 -2.38 -0.02 1.86 15 24 H 0.07 2.85 5.06 -2.39 -0.01 2.84 15 25 H 0.25 16.29 8.73 -92.71 -0.81 15.48 15 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 27 H 0.08 1.69 8.14 -2.38 -0.02 1.67 15 28 H 0.12 1.79 7.17 -2.39 -0.02 1.77 15 Total: -1.00 -73.33 240.07 3.49 -69.84 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.95 Total: 6.17 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.79 Total: -30.34 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -3.00 Total: -85.51 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.04 Total: -10.37 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.80 Total: 50.22 kcal Total: -73.33 3.49 -69.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330192.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.851 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds