Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34472 * 126.17160 * 2 1 4 4 C 1.30249 * 108.70300 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.62122 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47366 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47080 * 59.96674 * 5 4 3 8 8 C 1.50698 * 109.46530 * 299.97235 * 5 4 3 9 9 H 1.08002 * 120.00462 * 5.46564 * 8 5 4 10 10 C 1.37880 * 120.00136 * 185.46078 * 8 5 4 11 11 N 1.31523 * 119.99351 * 9.56940 * 10 8 5 12 12 Si 1.86795 * 120.00491 * 189.57019 * 10 8 5 13 13 H 1.48502 * 109.47425 * 84.99247 * 12 10 8 14 14 H 1.48504 * 109.47119 * 204.99583 * 12 10 8 15 15 H 1.48502 * 109.47253 * 324.99435 * 12 10 8 16 16 O 1.33965 * 108.76215 * 359.97438 * 4 3 2 17 17 C 1.34331 * 126.16022 * 179.97438 * 2 1 3 18 18 C 1.50700 * 126.44321 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46915 * 270.02918 * 1 2 3 20 20 H 1.09007 * 109.46623 * 30.02080 * 1 2 3 21 21 H 1.08994 * 109.47683 * 150.02620 * 1 2 3 22 22 H 1.09000 * 109.47340 * 303.50645 * 7 5 4 23 23 H 1.09004 * 109.47064 * 63.50977 * 7 5 4 24 24 H 1.08996 * 109.47036 * 183.50176 * 7 5 4 25 25 H 0.97001 * 119.99492 * 179.97438 * 11 10 8 26 26 H 1.08998 * 109.47023 * 180.02562 * 18 17 2 27 27 H 1.08995 * 109.47280 * 300.01295 * 18 17 2 28 28 H 1.08998 * 109.47378 * 60.02101 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3007 1.0855 0.0000 4 6 3.5431 0.6945 0.0006 5 6 4.7481 1.5996 0.0013 6 1 5.6558 0.9962 0.0021 7 6 4.7217 2.4830 1.2502 8 6 4.7240 2.4690 -1.2294 9 1 3.8741 2.4390 -1.8952 10 6 5.7868 3.3028 -1.5055 11 7 6.8971 3.2060 -0.8071 12 14 5.6499 4.5698 -2.8712 13 1 5.0063 5.7994 -2.3431 14 1 7.0062 4.8996 -3.3782 15 1 4.8284 4.0176 -3.9782 16 8 3.5734 -0.6448 0.0015 17 6 2.2997 -1.0846 0.0005 18 6 1.8491 -2.5226 0.0017 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8899 -0.5142 21 1 -0.3634 -0.8901 -0.5134 22 1 3.7855 3.0404 1.2813 23 1 4.8019 1.8575 2.1394 24 1 5.5590 3.1802 1.2199 25 1 7.6450 3.7923 -1.0015 26 1 2.7211 -3.1766 0.0023 27 1 1.2503 -2.7150 0.8918 28 1 1.2501 -2.7165 -0.8881 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330194.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -0.497766 kcal Electronic energy + Delta-G solvation = -12153.402443 eV Core-core repulsion = 9977.509847 eV Total energy + Delta-G solvation = -2175.892596 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.47495 -34.66971 -34.36059 -32.25945 -30.43162 -28.69521 -25.33630 -24.94941 -22.22774 -20.35556 -19.54473 -16.46637 -15.78896 -15.75293 -14.67575 -13.71032 -13.57118 -13.05790 -12.79183 -12.70855 -12.48822 -12.11122 -11.76482 -11.54838 -11.04854 -10.90347 -10.60169 -10.33271 -10.09548 -9.89010 -9.55059 -9.17022 -8.44375 -7.69944 -6.12922 -4.14821 2.23340 3.31349 3.36406 3.39204 3.55134 3.56022 4.41614 4.95437 5.21510 5.24619 5.37114 5.52692 5.58805 5.83824 5.88460 6.04231 6.12155 6.66352 6.67003 6.76378 6.89618 6.94736 7.23055 7.47106 7.70718 7.87292 8.15389 8.76256 8.86112 9.47692 10.96439 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.050878 B = 0.009842 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.203094 B = 2844.292316 C = 3005.990281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.019 4.019 3 N -0.495 5.495 4 C 0.250 3.750 5 C 0.128 3.872 6 H 0.059 0.941 7 C -0.123 4.123 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.066 3.934 11 N -0.889 5.889 12 Si 0.902 3.098 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.274 1.274 16 O -0.210 6.210 17 C -0.098 4.098 18 C -0.055 4.055 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.044 0.956 23 H 0.016 0.984 24 H 0.079 0.921 25 H 0.265 0.735 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -7.269 1.934 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 N -0.223 5.223 4 C 0.044 3.956 5 C 0.109 3.891 6 H 0.077 0.923 7 C -0.181 4.181 8 C -0.546 4.546 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.526 5.526 12 Si 0.729 3.271 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.199 1.199 16 O -0.099 6.099 17 C -0.151 4.151 18 C -0.112 4.112 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.035 0.965 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.038 -6.586 1.951 10.573 hybrid contribution 0.198 -0.013 -0.735 0.762 sum -7.840 -6.600 1.215 10.320 Atomic orbital electron populations 1.19991 0.87663 1.02496 1.01941 1.21504 0.97464 0.88638 1.06310 1.70394 1.00893 1.30072 1.20925 1.27768 0.96621 0.77597 0.93615 1.17611 0.85123 0.89708 0.96695 0.92287 1.21701 1.02287 0.99715 0.94445 1.20877 1.04126 1.22588 1.07037 0.91841 1.24910 0.94557 0.97403 0.96794 1.69961 1.03235 1.38187 1.41238 0.86446 0.77183 0.81733 0.81735 1.20265 1.21193 1.19882 1.84433 1.29438 1.25618 1.70418 1.22854 0.81995 0.97600 1.12683 1.20043 1.01166 0.87421 1.02564 0.91485 0.91040 0.91575 0.93699 0.96485 0.90260 0.92582 0.91059 0.90484 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.22 36.01 0.37 -0.55 15 2 C -0.02 -0.38 7.11 -82.81 -0.59 -0.97 15 3 N -0.49 -11.88 11.29 -7.36 -0.08 -11.97 15 4 C 0.25 6.20 6.79 -12.95 -0.09 6.12 15 5 C 0.13 3.37 2.63 -92.92 -0.24 3.13 15 6 H 0.06 1.62 8.09 -51.93 -0.42 1.20 15 7 C -0.12 -3.01 9.05 37.16 0.34 -2.68 15 8 C -0.51 -14.36 8.46 -34.44 -0.29 -14.66 15 9 H 0.06 1.85 7.76 -52.49 -0.41 1.44 15 10 C 0.07 1.82 5.17 -17.81 -0.09 1.73 15 11 N -0.89 -25.09 12.16 55.43 0.67 -24.42 15 12 Si 0.90 21.52 29.55 -169.99 -5.02 16.50 15 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 16 O -0.21 -4.80 10.78 5.37 0.06 -4.74 15 17 C -0.10 -1.86 7.39 -35.69 -0.26 -2.13 15 18 C -0.05 -0.70 9.96 36.01 0.36 -0.34 15 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.07 0.76 7.89 -51.93 -0.41 0.35 15 22 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 24 H 0.08 2.03 6.83 -51.93 -0.35 1.68 15 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 LS Contribution 247.75 15.07 3.73 3.73 Total: -1.00 -30.70 247.75 -4.83 -35.54 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.69 Total: -4.30 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.51 Total: -10.35 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.59 Total: -36.39 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.06 Total: -4.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.70 -4.83 -35.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330194.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.039 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds