Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34675 * 126.59506 * 2 1 4 4 N 1.34125 * 108.01998 * 179.81689 * 3 2 1 5 5 C 1.30499 * 109.26052 * 0.36785 * 4 3 2 6 6 C 1.50698 * 125.64982 * 179.89192 * 5 4 3 7 7 C 1.53000 * 109.46939 * 119.69562 * 6 5 4 8 8 N 1.46903 * 109.47289 * 239.69277 * 6 5 4 9 9 C 1.50694 * 109.47166 * 359.69584 * 6 5 4 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 6 5 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 6 14 14 H 1.48498 * 109.47200 * 59.99994 * 13 11 9 15 15 H 1.48498 * 109.46671 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47156 * 300.00008 * 13 11 9 17 17 N 1.35040 * 108.69726 * 359.63099 * 5 4 3 18 18 H 0.96996 * 126.39701 * 180.24145 * 17 5 4 19 19 H 1.09006 * 109.47095 * 269.95773 * 1 2 3 20 20 H 1.09000 * 109.47214 * 29.95473 * 1 2 3 21 21 H 1.09002 * 109.47324 * 149.95435 * 1 2 3 22 22 H 1.07997 * 125.98490 * 0.02562 * 3 2 1 23 23 H 1.09000 * 109.47156 * 300.00240 * 7 6 5 24 24 H 1.08998 * 109.47223 * 59.99732 * 7 6 5 25 25 H 1.08995 * 109.47095 * 179.97438 * 7 6 5 26 26 H 1.00896 * 110.99814 * 296.05491 * 8 6 5 27 27 H 1.00904 * 110.99282 * 60.00362 * 8 6 5 28 28 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6540 0.0041 5 6 3.5968 -0.6509 -0.0013 6 6 4.8318 -1.5145 -0.0015 7 6 4.8368 -2.3975 1.2479 8 7 4.8359 -2.3629 -1.2008 9 6 6.0576 -0.6380 -0.0021 10 1 5.9530 0.4369 -0.0027 11 6 7.3130 -1.2084 -0.0018 12 7 7.4405 -2.5174 -0.0016 13 14 8.8325 -0.1219 -0.0103 14 1 8.8305 0.7414 1.1980 15 1 10.0494 -0.9730 -0.0080 16 1 8.8256 0.7295 -1.2270 17 7 2.3230 -1.0991 -0.0008 18 1 2.0392 -2.0266 -0.0008 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3633 0.8904 -0.5131 21 1 -0.3634 -0.8896 -0.5145 22 1 1.9865 2.1117 0.0004 23 1 4.8337 -1.7680 2.1378 24 1 3.9501 -3.0314 1.2483 25 1 5.7298 -3.0225 1.2475 26 1 4.0578 -3.0052 -1.1919 27 1 4.8327 -1.8026 -2.0400 28 1 8.3236 -2.9186 -0.0011 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330264.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = 56.196831 kcal Electronic energy + Delta-G solvation = -12419.905660 eV Core-core repulsion = 10278.764277 eV Total energy + Delta-G solvation = -2141.141383 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.35428 -35.44219 -32.10848 -31.68348 -30.48068 -27.72586 -25.79427 -24.83385 -21.50837 -20.25077 -19.27171 -16.55914 -15.93223 -14.68324 -14.51830 -14.07355 -13.64473 -13.10293 -12.93781 -12.65512 -12.39387 -12.27890 -11.34807 -10.79987 -10.66160 -10.58116 -10.35880 -9.85409 -9.28122 -9.23980 -8.72940 -8.30342 -7.67855 -7.20902 -5.79211 -3.90799 2.68143 3.45486 3.47858 3.52854 3.75309 3.98301 4.58351 5.26596 5.33883 5.41825 5.55258 5.65035 5.93323 6.02305 6.10969 6.28562 6.65673 6.87337 6.95419 7.13418 7.44188 7.75383 8.08277 8.14144 8.27928 8.55374 8.87128 9.08499 9.24343 9.76380 11.23067 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.057522 B = 0.011213 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.651442 B = 2496.562541 C = 2794.561058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.067 4.067 3 C -0.035 4.035 4 N -0.477 5.477 5 C 0.223 3.777 6 C 0.319 3.681 7 C -0.125 4.125 8 N -0.798 5.798 9 C -0.508 4.508 10 H 0.075 0.925 11 C 0.079 3.921 12 N -0.855 5.855 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.278 1.278 17 N -0.576 5.576 18 H 0.407 0.593 19 H 0.063 0.937 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.156 0.844 23 H 0.035 0.965 24 H 0.001 0.999 25 H 0.103 0.897 26 H 0.292 0.708 27 H 0.325 0.675 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 0.754 -0.050 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.182 4.182 3 C -0.184 4.184 4 N -0.195 5.195 5 C -0.044 4.044 6 C 0.226 3.774 7 C -0.184 4.184 8 N -0.324 5.324 9 C -0.547 4.547 10 H 0.093 0.907 11 C -0.126 4.126 12 N -0.491 5.491 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.204 1.204 17 N -0.179 5.179 18 H 0.244 0.756 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.174 0.826 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.079 0.899 0.213 9.126 hybrid contribution -1.131 0.121 -0.232 1.161 sum -10.210 1.019 -0.020 10.261 Atomic orbital electron populations 1.20065 0.88240 1.02387 1.01802 1.21083 0.93786 0.88044 1.15287 1.22152 0.89682 0.97847 1.08693 1.70417 1.20264 1.09319 1.19485 1.26029 0.86366 0.92101 0.99909 1.17242 0.84815 0.86734 0.88586 1.21821 1.01020 0.98951 0.96640 1.59314 1.47256 1.21547 1.04281 1.20855 0.88257 0.93102 1.52504 0.90706 1.24923 0.98561 0.94768 0.94340 1.70010 1.22304 1.08832 1.47985 0.86689 0.82223 0.80452 0.78647 1.20391 1.21634 1.20364 1.43388 1.07759 1.08473 1.58244 0.75637 0.91813 0.90727 0.92533 0.82625 0.94591 0.97956 0.87894 0.89780 0.86286 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.44 36.00 0.38 -0.40 15 2 C -0.07 -1.13 7.24 -81.60 -0.59 -1.72 15 3 C -0.03 -0.67 11.79 -17.81 -0.21 -0.88 15 4 N -0.48 -11.32 9.99 -10.82 -0.11 -11.43 15 5 C 0.22 5.02 6.64 -155.42 -1.03 3.99 15 6 C 0.32 7.79 0.79 -133.91 -0.11 7.68 15 7 C -0.13 -2.97 8.49 37.16 0.32 -2.65 15 8 N -0.80 -18.23 8.17 -1.14 -0.01 -18.24 15 9 C -0.51 -14.17 8.07 -34.44 -0.28 -14.44 15 10 H 0.07 2.20 6.90 -52.49 -0.36 1.84 15 11 C 0.08 2.19 5.23 -17.82 -0.09 2.10 15 12 N -0.86 -23.96 10.80 55.43 0.60 -23.37 15 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 17 N -0.58 -10.39 6.15 -6.54 -0.04 -10.43 15 18 H 0.41 6.17 8.96 -40.82 -0.37 5.81 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.16 2.55 8.06 -52.49 -0.42 2.13 15 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 15 25 H 0.10 2.69 6.07 -51.93 -0.32 2.37 15 26 H 0.29 5.77 8.98 -39.29 -0.35 5.41 15 27 H 0.32 7.44 8.98 -39.29 -0.35 7.09 15 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 241.63 15.07 3.64 3.64 Total: -1.00 -30.85 241.63 -5.98 -36.83 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -3.42 Total: 12.51 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.62 Total: -6.33 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.44 Total: -63.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.85 -5.98 -36.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330264.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.026 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds