Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35324 * 126.12500 * 2 1 4 4 C 1.39872 * 107.92021 * 180.14769 * 3 2 1 5 5 C 1.50698 * 125.89773 * 179.86880 * 4 3 2 6 6 C 1.53000 * 109.46939 * 239.71402 * 5 4 3 7 7 N 1.46903 * 109.47289 * 359.71117 * 5 4 3 8 8 C 1.50694 * 109.47166 * 119.71424 * 5 4 3 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 5 4 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99913 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 119.99854 * 179.72538 * 10 8 5 13 13 H 1.48504 * 109.47032 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46816 * 120.00323 * 12 10 8 15 15 H 1.48495 * 109.46630 * 240.00111 * 12 10 8 16 16 N 1.30834 * 108.20208 * 359.60233 * 4 3 2 17 17 N 1.34952 * 126.12946 * 179.71249 * 2 1 3 18 18 H 0.96993 * 126.03947 * 359.97438 * 17 2 1 19 19 H 1.09001 * 109.46741 * 270.26027 * 1 2 3 20 20 H 1.08995 * 109.47440 * 30.26460 * 1 2 3 21 21 H 1.08999 * 109.46556 * 150.26745 * 1 2 3 22 22 H 1.08000 * 126.03637 * 0.03588 * 3 2 1 23 23 H 1.09000 * 109.47156 * 300.00240 * 6 5 4 24 24 H 1.08998 * 109.47223 * 59.99732 * 6 5 4 25 25 H 1.08995 * 109.47095 * 179.97438 * 6 5 4 26 26 H 1.00904 * 110.99282 * 60.00362 * 7 5 4 27 27 H 1.00893 * 111.00054 * 183.95569 * 7 5 4 28 28 H 0.97001 * 119.99646 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0931 0.0000 4 6 3.6335 0.6561 -0.0034 5 6 4.8542 1.5397 -0.0074 6 6 5.6904 1.2486 -1.2552 7 7 4.4389 2.9487 -0.0142 8 6 5.6775 1.2645 1.2244 9 1 5.3495 0.5242 1.9390 10 6 6.8498 1.9580 1.4392 11 7 7.2491 2.8599 0.5693 12 14 7.8664 1.6224 2.9700 13 1 7.2015 0.5747 3.7859 14 1 9.2192 1.1560 2.5733 15 1 7.9867 2.8694 3.7673 16 7 3.6335 -0.6522 0.0032 17 7 2.3027 -1.0900 0.0055 18 1 2.0057 -2.0133 0.0105 19 1 -0.3633 0.0047 1.0277 20 1 -0.3634 0.8875 -0.5179 21 1 -0.3632 -0.8924 -0.5097 22 1 1.9740 2.1211 0.0005 23 1 5.9986 0.2030 -1.2503 24 1 5.0949 1.4475 -2.1462 25 1 6.5731 1.8879 -1.2584 26 1 3.8848 3.1662 0.8006 27 1 5.2380 3.5609 -0.0819 28 1 8.0740 3.3475 0.7202 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = 41.752019 kcal Electronic energy + Delta-G solvation = -12364.418271 eV Core-core repulsion = 10222.650514 eV Total energy + Delta-G solvation = -2141.767757 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.93504 -37.52080 -33.77190 -32.80783 -31.17469 -29.39210 -27.48599 -27.22471 -23.76541 -21.23758 -19.96204 -18.27867 -17.90386 -16.83534 -15.90160 -15.62678 -15.03240 -14.43628 -14.26410 -13.80537 -13.50429 -13.33880 -13.05045 -12.86389 -12.76197 -12.38640 -12.29120 -11.77547 -11.73233 -11.10251 -10.63513 -9.94920 -9.30236 -9.09244 -8.04504 -6.28111 1.15879 1.36881 1.40279 1.50831 2.12620 2.23994 2.43617 3.10019 3.97435 4.08698 4.43491 4.58272 4.83587 4.85527 5.01295 5.10698 5.16420 5.20158 5.30657 5.55641 5.74695 5.85690 6.00786 6.19575 6.64154 6.74571 6.94222 7.16958 7.20623 7.47483 8.87823 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.051762 B = 0.010992 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.806813 B = 2546.739206 C = 2714.227308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.082 3.918 3 C -0.286 4.286 4 C 0.103 3.897 5 C 0.297 3.703 6 C -0.108 4.108 7 N -0.831 5.831 8 C -0.547 4.547 9 H 0.031 0.969 10 C 0.031 3.969 11 N -0.903 5.903 12 Si 0.954 3.046 13 H -0.283 1.283 14 H -0.279 1.279 15 H -0.273 1.273 16 N -0.342 5.342 17 N -0.484 5.484 18 H 0.443 0.557 19 H 0.092 0.908 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.149 0.851 23 H 0.021 0.979 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.319 0.681 27 H 0.350 0.650 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -3.332 -0.306 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C -0.315 4.315 4 C -0.064 4.064 5 C 0.203 3.797 6 C -0.167 4.167 7 N -0.360 5.360 8 C -0.587 4.587 9 H 0.049 0.951 10 C -0.169 4.169 11 N -0.543 5.543 12 Si 0.781 3.219 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.199 1.199 16 N -0.165 5.165 17 N -0.194 5.194 18 H 0.289 0.711 19 H 0.110 0.890 20 H 0.114 0.886 21 H 0.109 0.891 22 H 0.166 0.834 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.129 0.871 27 H 0.166 0.834 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.604 -4.418 -1.034 11.534 hybrid contribution 0.891 0.089 1.657 1.883 sum -9.714 -4.329 0.623 10.653 Atomic orbital electron populations 1.20536 0.83677 1.05180 1.04437 1.21740 0.96314 0.86901 0.99801 1.21330 0.91411 1.00034 1.18744 1.22802 0.96973 0.91320 0.95261 1.16647 0.85130 0.85003 0.92904 1.21517 1.00525 0.99037 0.95647 1.59272 1.27099 1.04747 1.44911 1.21877 1.07921 1.21784 1.07111 0.95064 1.25538 0.97595 0.94757 0.99013 1.69767 1.23764 1.24987 1.35738 0.85581 0.78495 0.77870 0.80000 1.20876 1.20472 1.19868 1.77230 0.97209 1.13689 1.28420 1.46329 1.03639 1.08686 1.60703 0.71135 0.88990 0.88642 0.89141 0.83363 0.95938 0.95899 0.91143 0.87129 0.83450 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.43 71.24 0.74 -0.72 15 2 C 0.08 2.59 7.21 41.41 0.30 2.88 15 3 C -0.29 -11.46 9.83 21.99 0.22 -11.24 15 4 C 0.10 4.98 5.61 43.10 0.24 5.22 15 5 C 0.30 15.53 0.88 2.03 0.00 15.53 15 6 C -0.11 -5.71 8.49 71.98 0.61 -5.10 15 7 N -0.83 -40.28 8.23 -157.52 -1.30 -41.58 15 8 C -0.55 -31.07 8.16 25.60 0.21 -30.86 15 9 H 0.03 1.88 7.74 -2.91 -0.02 1.86 15 10 C 0.03 1.71 5.22 84.66 0.44 2.16 15 11 N -0.90 -49.04 9.57 21.45 0.21 -48.83 15 12 Si 0.95 44.17 29.54 68.60 2.03 46.20 15 13 H -0.28 -13.43 7.11 99.48 0.71 -12.73 15 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 16 N -0.34 -15.99 12.70 -47.39 -0.60 -16.59 15 17 N -0.48 -16.61 7.36 -48.00 -0.35 -16.97 15 18 H 0.44 11.29 8.96 -213.33 -1.91 9.38 15 19 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.09 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.15 5.58 7.71 -2.91 -0.02 5.56 15 23 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 25 H 0.07 3.88 6.07 -2.39 -0.01 3.87 15 26 H 0.32 14.81 8.57 -89.69 -0.77 14.04 15 27 H 0.35 17.88 6.99 -89.70 -0.63 17.26 15 28 H 0.27 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -65.30 239.62 0.63 -64.67 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -2.11 Total: 35.23 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 2.76 Total: -22.13 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -2.05 Total: -123.96 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -65.30 0.63 -64.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.425 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds