Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47613 * 2 1 4 4 N 1.46902 * 109.47046 * 239.99198 * 2 1 3 5 5 C 1.46909 * 110.99289 * 85.00709 * 4 2 1 6 6 C 1.50702 * 109.46709 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00227 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00372 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46958 * 90.00314 * 10 8 6 12 12 H 1.48503 * 109.46874 * 210.00064 * 10 8 6 13 13 H 1.48498 * 109.47247 * 330.00317 * 10 8 6 14 14 C 1.50707 * 109.46435 * 120.00073 * 2 1 3 15 15 C 1.41388 * 126.57299 * 259.97280 * 14 2 1 16 16 C 1.34517 * 106.83576 * 180.02562 * 15 14 2 17 17 O 1.34310 * 108.41865 * 359.74121 * 16 15 14 18 18 C 1.34295 * 109.47916 * 0.43837 * 17 16 15 19 19 H 1.08994 * 109.47613 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47024 * 300.00814 * 1 2 3 21 21 H 1.09004 * 109.46582 * 59.99722 * 1 2 3 22 22 H 1.00897 * 111.00058 * 208.95675 * 4 2 1 23 23 H 1.08998 * 109.47037 * 299.99343 * 5 4 2 24 24 H 1.08998 * 109.47430 * 60.00138 * 5 4 2 25 25 H 0.96991 * 120.00509 * 180.02562 * 9 8 6 26 26 H 1.07992 * 126.58200 * 0.02562 * 15 14 2 27 27 H 1.08001 * 125.79062 * 180.02562 * 16 15 14 28 28 H 1.08002 * 125.79286 * 179.83073 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6927 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 1 2.8370 -1.5701 -3.4795 8 6 2.7307 0.1347 -4.7597 9 7 2.4273 1.4110 -4.8528 10 14 3.3571 -0.7880 -6.2583 11 1 2.2081 -1.3711 -6.9966 12 1 4.0914 0.1495 -7.1456 13 1 4.2698 -1.8759 -5.8240 14 6 2.0323 -0.7105 1.2306 15 6 2.4994 -0.1064 2.4205 16 6 2.8472 -1.1038 3.2533 17 8 2.6115 -2.2734 2.6364 18 6 2.1228 -2.0409 1.4073 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 2.9173 -1.1207 -1.0286 23 1 1.0872 0.6162 -2.5526 24 1 2.7590 1.0460 -2.1182 25 1 2.5277 1.8729 -5.6997 26 1 2.5644 0.9526 2.6221 27 1 3.2441 -0.9846 4.2506 28 1 1.8450 -2.7943 0.6850 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087289644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 7.158252 kcal Electronic energy + Delta-G solvation = -11843.419556 eV Core-core repulsion = 9667.858950 eV Total energy + Delta-G solvation = -2175.560607 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.31317 -36.41710 -33.19920 -31.92912 -29.79165 -28.49502 -26.08845 -23.04611 -21.66155 -20.99015 -19.30801 -17.42816 -16.17510 -15.70980 -14.77685 -14.66085 -14.26058 -13.60906 -13.05620 -12.60935 -12.27955 -12.12214 -11.63259 -11.43723 -11.34684 -10.87715 -10.61303 -10.33926 -9.88442 -9.47468 -9.13182 -8.47131 -8.28482 -7.31422 -6.02201 -4.04065 2.00046 2.85228 3.33055 3.36941 3.38664 3.42575 4.43837 4.94646 5.11828 5.33123 5.33942 5.44730 5.80345 5.93303 6.02129 6.13625 6.35632 6.42422 6.54597 6.68583 6.81490 7.25779 7.37475 7.43784 7.80233 8.14506 8.41379 8.62003 9.05167 9.60764 11.09016 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.061203 B = 0.007490 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.382019 B = 3737.444193 C = 3945.556806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.147 3.853 3 H 0.042 0.958 4 N -0.684 5.684 5 C 0.193 3.807 6 C -0.513 4.513 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.175 4.175 15 C -0.207 4.207 16 C -0.056 4.056 17 O -0.183 6.183 18 C -0.026 4.026 19 H 0.056 0.944 20 H 0.044 0.956 21 H 0.059 0.941 22 H 0.330 0.670 23 H 0.030 0.970 24 H -0.014 1.014 25 H 0.261 0.739 26 H 0.143 0.857 27 H 0.197 0.803 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -3.570 12.960 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.060 0.940 4 N -0.315 5.315 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.176 4.176 15 C -0.227 4.227 16 C -0.123 4.123 17 O -0.079 6.079 18 C -0.094 4.094 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.147 0.853 23 H 0.048 0.952 24 H 0.004 0.996 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.214 0.786 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.100 -3.935 12.769 13.407 hybrid contribution 1.086 0.502 -0.721 1.397 sum -0.014 -3.434 12.048 12.528 Atomic orbital electron populations 1.21722 0.94527 1.01783 1.00635 1.19855 0.95247 0.94900 0.86307 0.94016 1.60828 1.32498 1.34686 1.03512 1.19610 0.96571 0.90238 0.86895 1.21184 1.43294 0.96726 0.94005 0.91974 1.24987 0.95680 0.94887 0.99017 1.69959 1.48965 1.09005 1.25856 0.86483 0.78888 0.79464 0.82464 1.20621 1.21326 1.19850 1.20731 1.05532 0.93840 0.97526 1.21773 1.05936 1.00304 0.94654 1.23878 1.06500 0.82453 0.99491 1.84047 1.64533 1.33313 1.26043 1.23958 1.02517 0.97771 0.85165 0.92510 0.93676 0.92169 0.85332 0.95213 0.99597 0.92920 0.83873 0.78615 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.40 37.16 0.35 -1.86 15 2 C 0.15 2.74 3.08 -68.86 -0.21 2.53 15 3 H 0.04 0.83 7.80 -51.93 -0.40 0.42 15 4 N -0.68 -14.83 6.09 -109.21 -0.67 -15.50 15 5 C 0.19 5.13 5.24 -4.97 -0.03 5.10 15 6 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 15 7 H 0.06 1.74 7.81 -52.48 -0.41 1.33 15 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 9 N -0.90 -27.05 13.29 55.43 0.74 -26.32 15 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 14 C -0.17 -2.83 4.89 -104.74 -0.51 -3.35 15 15 C -0.21 -2.93 10.87 -39.70 -0.43 -3.36 15 16 C -0.06 -0.69 12.09 29.42 0.36 -0.33 15 17 O -0.18 -2.60 10.65 5.71 0.06 -2.54 15 18 C -0.03 -0.40 11.49 29.41 0.34 -0.06 15 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 1.11 7.45 -51.93 -0.39 0.73 15 22 H 0.33 6.98 8.14 -39.29 -0.32 6.66 15 23 H 0.03 0.84 7.44 -51.93 -0.39 0.46 15 24 H -0.01 -0.39 8.06 -51.93 -0.42 -0.81 15 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 26 H 0.14 1.79 8.06 -52.49 -0.42 1.36 15 27 H 0.20 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.21 2.80 8.06 -52.49 -0.42 2.37 15 LS Contribution 248.18 15.07 3.74 3.74 Total: -1.00 -30.73 248.18 -5.28 -36.01 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.57 Total: 2.61 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.56 Total: -14.81 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.07 Total: -41.81 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.06 Total: -2.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.73 -5.28 -36.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087289644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.165 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds