Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47613 * 2 1 4 4 N 1.46902 * 109.47046 * 239.99198 * 2 1 3 5 5 C 1.46909 * 110.99289 * 85.00709 * 4 2 1 6 6 C 1.50702 * 109.46709 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00227 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00372 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46958 * 90.00314 * 10 8 6 12 12 H 1.48503 * 109.46874 * 210.00064 * 10 8 6 13 13 H 1.48498 * 109.47247 * 330.00317 * 10 8 6 14 14 C 1.50707 * 109.46435 * 120.00073 * 2 1 3 15 15 C 1.41388 * 126.57299 * 259.97280 * 14 2 1 16 16 C 1.34517 * 106.83576 * 180.02562 * 15 14 2 17 17 O 1.34310 * 108.41865 * 359.74121 * 16 15 14 18 18 C 1.34295 * 109.47916 * 0.43837 * 17 16 15 19 19 H 1.08994 * 109.47613 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47024 * 300.00814 * 1 2 3 21 21 H 1.09004 * 109.46582 * 59.99722 * 1 2 3 22 22 H 1.00897 * 111.00058 * 208.95675 * 4 2 1 23 23 H 1.08998 * 109.47037 * 299.99343 * 5 4 2 24 24 H 1.08998 * 109.47430 * 60.00138 * 5 4 2 25 25 H 0.96991 * 120.00509 * 180.02562 * 9 8 6 26 26 H 1.07992 * 126.58200 * 0.02562 * 15 14 2 27 27 H 1.08001 * 125.79062 * 180.02562 * 16 15 14 28 28 H 1.08002 * 125.79286 * 179.83073 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6927 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 1 2.8370 -1.5701 -3.4795 8 6 2.7307 0.1347 -4.7597 9 7 2.4273 1.4110 -4.8528 10 14 3.3571 -0.7880 -6.2583 11 1 2.2081 -1.3711 -6.9966 12 1 4.0914 0.1495 -7.1456 13 1 4.2698 -1.8759 -5.8240 14 6 2.0323 -0.7105 1.2306 15 6 2.4994 -0.1064 2.4205 16 6 2.8472 -1.1038 3.2533 17 8 2.6115 -2.2734 2.6364 18 6 2.1228 -2.0409 1.4073 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 2.9173 -1.1207 -1.0286 23 1 1.0872 0.6162 -2.5526 24 1 2.7590 1.0460 -2.1182 25 1 2.5277 1.8729 -5.6997 26 1 2.5644 0.9526 2.6221 27 1 3.2441 -0.9846 4.2506 28 1 1.8450 -2.7943 0.6850 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087289644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = -13.948805 kcal Electronic energy + Delta-G solvation = -11844.334827 eV Core-core repulsion = 9667.858950 eV Total energy + Delta-G solvation = -2176.475877 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.42165 -38.05275 -35.12786 -33.48617 -31.32270 -29.73735 -28.09872 -24.73693 -23.23246 -22.28265 -20.62943 -18.93628 -18.02112 -16.83483 -16.65494 -16.35856 -15.53482 -15.17632 -14.77441 -14.17565 -13.65305 -13.62949 -13.31771 -13.06086 -12.99663 -12.72214 -12.39943 -12.05791 -11.80178 -11.32968 -10.66596 -10.57553 -9.40436 -9.18200 -8.22669 -6.34023 0.92697 1.41578 1.43584 1.54756 1.69794 2.33608 2.40318 3.10810 3.49459 3.86721 4.16578 4.18757 4.50352 4.54479 4.74303 4.85272 5.00564 5.04989 5.19106 5.26161 5.31592 5.37400 5.58611 5.62696 6.01646 6.23949 6.44970 6.70251 6.87751 7.36971 8.89214 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.061203 B = 0.007490 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.382019 B = 3737.444193 C = 3945.556806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.147 3.853 3 H 0.024 0.976 4 N -0.677 5.677 5 C 0.209 3.791 6 C -0.535 4.535 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.975 3.025 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.262 1.262 14 C -0.196 4.196 15 C -0.230 4.230 16 C -0.034 4.034 17 O -0.186 6.186 18 C -0.028 4.028 19 H 0.062 0.938 20 H 0.068 0.932 21 H 0.037 0.963 22 H 0.333 0.667 23 H 0.004 0.996 24 H -0.044 1.044 25 H 0.265 0.735 26 H 0.155 0.845 27 H 0.243 0.757 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -4.853 13.827 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.038 3.962 3 H 0.042 0.958 4 N -0.307 5.307 5 C 0.081 3.919 6 C -0.573 4.573 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.187 1.187 14 C -0.198 4.198 15 C -0.250 4.250 16 C -0.101 4.101 17 O -0.082 6.082 18 C -0.096 4.096 19 H 0.081 0.919 20 H 0.087 0.913 21 H 0.056 0.944 22 H 0.151 0.849 23 H 0.022 0.978 24 H -0.026 1.026 25 H 0.074 0.926 26 H 0.172 0.828 27 H 0.259 0.741 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.537 -5.231 13.662 14.639 hybrid contribution 0.901 0.933 -0.889 1.572 sum 0.364 -4.298 12.773 13.482 Atomic orbital electron populations 1.21667 0.93464 1.02183 1.00722 1.19830 0.96079 0.94018 0.86311 0.95813 1.60725 1.32593 1.33706 1.03706 1.19248 0.94106 0.89976 0.88547 1.21544 1.43702 0.97080 0.95022 0.91588 1.25969 0.95577 0.95750 1.02438 1.70092 1.49772 1.10743 1.26933 0.85305 0.78521 0.78233 0.78057 1.19788 1.20752 1.18664 1.20578 1.07284 0.94601 0.97319 1.21988 1.07085 1.01543 0.94353 1.24699 1.03918 0.81043 1.00409 1.84076 1.64288 1.34170 1.25619 1.24063 1.02326 0.97420 0.85753 0.91889 0.91264 0.94354 0.84949 0.97780 1.02598 0.92605 0.82760 0.74135 0.76903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 9.40 71.98 0.68 -3.54 15 2 C 0.15 5.57 3.08 44.17 0.14 5.70 15 3 H 0.02 0.98 7.80 -2.39 -0.02 0.96 15 4 N -0.68 -29.89 6.09 -499.42 -3.04 -32.93 15 5 C 0.21 11.49 5.24 85.56 0.45 11.94 15 6 C -0.54 -30.97 9.32 25.60 0.24 -30.73 15 7 H 0.07 3.68 7.81 -2.91 -0.02 3.66 15 8 C 0.00 0.04 5.46 84.65 0.46 0.51 15 9 N -0.94 -57.27 13.29 21.45 0.28 -56.98 15 10 Si 0.97 44.63 29.54 68.60 2.03 46.65 15 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 14 C -0.20 -6.19 4.89 -19.94 -0.10 -6.28 15 15 C -0.23 -6.06 10.87 22.19 0.24 -5.82 15 16 C -0.03 -0.72 12.09 66.97 0.81 0.09 15 17 O -0.19 -4.77 10.65 -2.48 -0.03 -4.80 15 18 C -0.03 -0.79 11.49 66.97 0.77 -0.02 15 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.04 1.45 7.45 -2.39 -0.02 1.44 15 22 H 0.33 14.24 8.14 -89.70 -0.73 13.51 15 23 H 0.00 0.24 7.44 -2.39 -0.02 0.23 15 24 H -0.04 -2.61 8.06 -2.39 -0.02 -2.63 15 25 H 0.27 15.19 8.31 -92.72 -0.77 14.42 15 26 H 0.15 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.24 2.69 8.06 -2.91 -0.02 2.67 15 28 H 0.21 5.54 8.06 -2.91 -0.02 5.51 15 Total: -1.00 -66.18 248.18 3.34 -62.84 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.42 Total: 13.38 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 3.68 Total: -28.16 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -2.76 Total: -89.91 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.03 Total: -4.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.18 3.34 -62.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087289644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.895 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds