Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47240 * 45.57931 * 3 2 1 5 5 C 1.36932 * 120.00116 * 270.80515 * 4 3 2 6 6 H 1.07999 * 120.00482 * 138.71593 * 5 4 3 7 7 C 1.38814 * 120.00012 * 318.71272 * 5 4 3 8 8 N 1.31614 * 120.00292 * 162.51044 * 7 5 4 9 9 Si 1.86803 * 119.99843 * 342.51127 * 7 5 4 10 10 H 1.48502 * 109.47131 * 95.31528 * 9 7 5 11 11 H 1.48502 * 109.47168 * 215.31836 * 9 7 5 12 12 H 1.48504 * 109.47311 * 335.31804 * 9 7 5 13 13 C 1.46500 * 119.99833 * 90.79838 * 4 3 2 14 14 C 1.53776 * 113.61431 * 136.42914 * 13 4 3 15 15 C 1.53960 * 87.01763 * 89.22901 * 14 13 4 16 16 N 1.46906 * 113.66517 * 139.92860 * 15 14 13 17 17 C 1.53781 * 113.61535 * 234.04340 * 13 4 3 18 18 H 1.08999 * 109.47497 * 285.58270 * 3 2 1 19 19 H 1.08997 * 109.47293 * 165.58244 * 3 2 1 20 20 H 0.97003 * 120.00334 * 179.97438 * 8 7 5 21 21 H 1.09005 * 112.85147 * 5.23809 * 13 4 3 22 22 H 1.09004 * 113.61719 * 203.74670 * 14 13 4 23 23 H 1.08995 * 113.61863 * 334.66139 * 14 13 4 24 24 H 1.08994 * 113.61978 * 270.80240 * 15 14 13 25 25 H 1.00903 * 110.99599 * 82.44550 * 16 15 14 26 26 H 1.00895 * 111.00035 * 206.39630 * 16 15 14 27 27 H 1.08998 * 113.61505 * 25.34722 * 17 13 4 28 28 H 1.08997 * 113.61779 * 156.16917 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -0.9659 -0.9865 5 6 3.3099 -2.2684 -0.6216 6 1 3.0199 -3.0695 -1.2853 7 6 3.8987 -2.5591 0.6013 8 7 3.7977 -3.7690 1.1094 9 14 4.8347 -1.2330 1.5260 10 1 3.9351 -0.5936 2.5196 11 1 5.9933 -1.8423 2.2272 12 1 5.3198 -0.2088 0.5663 13 6 3.3574 -0.5389 -2.3635 14 6 4.6708 -1.0915 -2.9416 15 6 3.8556 -2.3073 -3.4186 16 7 4.2347 -2.7836 -4.7556 17 6 2.6257 -1.3841 -3.4195 18 1 2.9715 -0.2752 0.9899 19 1 2.9709 0.9961 -0.2559 20 1 4.2095 -3.9722 1.9639 21 1 3.2365 0.5353 -2.5036 22 1 5.0763 -0.4910 -3.7559 23 1 5.4143 -1.3341 -2.1823 24 1 3.7983 -3.1102 -2.6837 25 1 5.0439 -3.3846 -4.7093 26 1 3.4621 -3.2516 -5.2052 27 1 1.7205 -1.8623 -3.0454 28 1 2.4697 -0.8632 -4.3642 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087653166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = 79.599569 kcal Electronic energy + Delta-G solvation = -12478.907593 eV Core-core repulsion = 10338.781029 eV Total energy + Delta-G solvation = -2140.126564 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.83999 -35.99256 -34.21657 -31.88329 -30.75386 -26.96000 -24.89071 -24.53863 -21.26294 -18.43658 -18.01897 -16.16791 -15.43972 -15.30465 -15.03057 -14.16597 -13.81908 -13.30880 -12.95164 -12.32821 -11.98103 -11.75723 -11.65645 -11.31089 -11.17573 -10.85602 -10.48412 -10.11184 -9.84221 -9.73901 -9.49737 -8.74001 -8.12337 -7.08938 -6.16983 -3.72699 3.13458 3.32090 3.35098 3.45666 3.59477 4.31795 4.78128 4.90062 5.12286 5.16189 5.42805 5.55160 5.76763 5.88956 6.00014 6.11229 6.30857 6.42798 6.62226 6.84601 6.89579 7.06589 7.72702 7.85076 7.88299 8.24277 8.37530 8.71441 9.45778 9.82239 10.95640 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.017320 C = 0.013059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.975550 B = 1616.278441 C = 2143.548696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.208 3.792 3 C 0.217 3.783 4 N -0.573 5.573 5 C -0.283 4.283 6 H 0.089 0.911 7 C 0.043 3.957 8 N -0.892 5.892 9 Si 0.872 3.128 10 H -0.281 1.281 11 H -0.295 1.295 12 H -0.258 1.258 13 C 0.156 3.844 14 C -0.134 4.134 15 C 0.057 3.943 16 N -0.848 5.848 17 C -0.153 4.153 18 H 0.091 0.909 19 H 0.091 0.909 20 H 0.267 0.733 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.333 0.667 26 H 0.331 0.669 27 H 0.061 0.939 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 5.549 -5.539 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.112 4.112 3 C 0.087 3.913 4 N -0.293 5.293 5 C -0.411 4.411 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.531 5.531 9 Si 0.701 3.299 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.182 1.182 13 C 0.049 3.951 14 C -0.174 4.174 15 C -0.053 4.053 16 N -0.376 5.376 17 C -0.193 4.193 18 H 0.108 0.892 19 H 0.109 0.891 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.835 6.182 -5.555 8.511 hybrid contribution 0.685 -0.568 1.032 1.363 sum 2.520 5.613 -4.523 7.636 Atomic orbital electron populations 1.80968 1.14124 1.10414 1.10065 1.31320 0.96809 0.91331 0.91742 1.19157 0.79914 0.95544 0.96677 1.43860 1.72279 1.07771 1.05374 1.18806 1.36403 0.81658 1.04213 0.89337 1.25574 0.96863 0.95826 0.97698 1.69807 1.43977 1.20566 1.18714 0.86976 0.80339 0.82744 0.79864 1.20836 1.22270 1.18214 1.21295 0.94678 0.95384 0.83786 1.23301 0.97858 0.97087 0.99169 1.23239 0.96408 0.96848 0.88849 1.59017 1.09901 1.46644 1.22083 1.23525 0.97457 0.99187 0.99181 0.89192 0.89085 0.92264 0.91312 0.90751 0.91157 0.89089 0.85628 0.85750 0.92059 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.60 18.54 42.15 0.78 -9.82 15 2 C 0.21 4.30 15.76 -20.76 -0.33 3.97 15 3 C 0.22 4.15 4.98 -6.83 -0.03 4.12 15 4 N -0.57 -12.10 2.24 -168.05 -0.38 -12.48 15 5 C -0.28 -7.04 8.02 -15.06 -0.12 -7.16 15 6 H 0.09 2.41 5.72 -52.49 -0.30 2.11 15 7 C 0.04 1.12 5.37 -17.43 -0.09 1.03 15 8 N -0.89 -25.30 13.97 55.49 0.78 -24.52 15 9 Si 0.87 19.52 24.88 -169.99 -4.23 15.29 15 10 H -0.28 -6.08 6.75 56.52 0.38 -5.70 15 11 H -0.30 -6.86 7.11 56.52 0.40 -6.46 15 12 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 13 C 0.16 2.85 4.66 -67.12 -0.31 2.54 15 14 C -0.13 -2.38 7.28 -25.83 -0.19 -2.57 15 15 C 0.06 1.01 4.35 -66.80 -0.29 0.72 15 16 N -0.85 -12.78 9.58 -3.89 -0.04 -12.81 15 17 C -0.15 -2.73 7.35 -25.91 -0.19 -2.92 15 18 H 0.09 1.84 3.36 -51.93 -0.17 1.66 15 19 H 0.09 1.37 7.96 -51.93 -0.41 0.96 15 20 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.07 1.09 7.96 -51.93 -0.41 0.68 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 23 H 0.07 1.37 8.02 -51.93 -0.42 0.95 15 24 H 0.09 1.94 5.26 -51.93 -0.27 1.66 15 25 H 0.33 4.61 9.08 -39.29 -0.36 4.26 15 26 H 0.33 4.54 9.07 -39.29 -0.36 4.18 15 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 237.09 15.07 3.57 3.57 Total: -1.00 -28.31 237.09 -4.20 -32.51 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.13 Total: 8.53 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.56 Total: -0.27 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 1.14 Total: -59.63 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.23 Total: 15.29 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.31 -4.20 -32.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087653166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.110 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds