Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41378 * 126.57863 * 2 1 4 4 C 1.34510 * 106.84217 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.78842 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47666 * 340.00886 * 5 4 3 7 7 N 1.46908 * 109.47113 * 220.00042 * 5 4 3 8 8 C 1.50704 * 109.46810 * 100.00498 * 5 4 3 9 9 H 1.07997 * 120.00039 * 5.24270 * 8 5 4 10 10 C 1.37878 * 119.99975 * 184.96414 * 8 5 4 11 11 N 1.31516 * 120.00171 * 6.73855 * 10 8 5 12 12 Si 1.86797 * 119.99815 * 186.74381 * 10 8 5 13 13 H 1.48503 * 109.47408 * 94.50933 * 12 10 8 14 14 H 1.48507 * 109.47089 * 214.50520 * 12 10 8 15 15 H 1.48502 * 109.47486 * 334.50486 * 12 10 8 16 16 O 1.34302 * 108.41882 * 0.26626 * 4 3 2 17 17 C 1.34300 * 109.47719 * 359.55922 * 16 4 3 18 18 C 1.50703 * 125.79421 * 180.21001 * 17 16 4 19 19 H 1.09001 * 109.47363 * 90.02809 * 1 2 3 20 20 H 1.09004 * 109.47136 * 210.02647 * 1 2 3 21 21 H 1.08997 * 109.47053 * 330.02091 * 1 2 3 22 22 H 1.08008 * 126.57938 * 359.94298 * 3 2 1 23 23 H 1.00899 * 110.99648 * 174.23301 * 7 5 4 24 24 H 1.00902 * 111.00069 * 298.19126 * 7 5 4 25 25 H 0.96993 * 119.99715 * 179.97438 * 11 10 8 26 26 H 1.08999 * 109.46944 * 270.27078 * 18 17 16 27 27 H 1.09008 * 109.46675 * 30.26591 * 18 17 16 28 28 H 1.08995 * 109.47602 * 150.26979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 6 4.8580 1.5341 0.0002 6 1 4.6110 2.5356 -0.3518 7 7 5.8624 0.9360 -0.8894 8 6 5.4115 1.6159 1.3996 9 1 4.9640 1.0345 2.1921 10 6 6.4927 2.4286 1.6668 11 7 6.9581 3.2316 0.7350 12 14 7.2968 2.3889 3.3524 13 1 8.4461 1.4486 3.3307 14 1 7.7771 3.7495 3.7039 15 1 6.3067 1.9371 4.3628 16 8 3.5848 -0.6616 -0.0050 17 6 2.3087 -1.0802 0.0006 18 6 1.8522 -2.5164 0.0015 19 1 -0.3634 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5135 22 1 2.0366 2.1691 -0.0009 23 1 6.6681 1.5366 -0.9805 24 1 6.1301 0.0181 -0.5672 25 1 7.7185 3.8035 0.9232 26 1 1.7420 -2.8633 -1.0259 27 1 2.5905 -3.1319 0.5156 28 1 0.8940 -2.5928 0.5155 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095662205.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = -7.345205 kcal Electronic energy + Delta-G solvation = -12129.035788 eV Core-core repulsion = 9952.846264 eV Total energy + Delta-G solvation = -2176.189524 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.71529 -34.82378 -33.59589 -31.71324 -30.57475 -28.16646 -26.27250 -24.78608 -21.76833 -20.47176 -18.30802 -16.66710 -15.74356 -15.27956 -14.72666 -14.17116 -13.29520 -13.22687 -12.95765 -12.69325 -12.50581 -12.05665 -11.76589 -11.60925 -11.34848 -11.06953 -11.01356 -10.67208 -10.10296 -9.92160 -8.78876 -8.66562 -7.52638 -7.18258 -6.17427 -4.32371 2.59376 3.20165 3.27539 3.31540 3.45823 3.83545 4.30310 5.06855 5.35361 5.45131 5.57407 5.67282 5.71910 5.94085 6.01847 6.13582 6.16753 6.45560 6.69621 6.74105 7.07033 7.33182 7.40299 7.68721 7.93887 8.19427 8.57457 8.76167 8.96208 9.36788 10.81996 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.050191 B = 0.009596 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.736040 B = 2917.162585 C = 2964.292353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.178 4.178 3 C -0.249 4.249 4 C 0.072 3.928 5 C 0.278 3.722 6 H 0.074 0.926 7 N -0.849 5.849 8 C -0.551 4.551 9 H 0.058 0.942 10 C 0.069 3.931 11 N -0.890 5.890 12 Si 0.900 3.100 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 O -0.169 6.169 17 C -0.060 4.060 18 C -0.062 4.062 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.137 0.863 23 H 0.351 0.649 24 H 0.320 0.680 25 H 0.267 0.733 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 -6.465 -0.748 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.180 4.180 3 C -0.268 4.268 4 C 0.020 3.980 5 C 0.168 3.832 6 H 0.091 0.909 7 N -0.377 5.377 8 C -0.590 4.590 9 H 0.077 0.923 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.728 3.272 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 O -0.065 6.065 17 C -0.109 4.109 18 C -0.118 4.118 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.155 0.845 23 H 0.165 0.835 24 H 0.129 0.871 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.992 -6.455 -1.366 10.364 hybrid contribution 0.970 0.318 1.850 2.113 sum -7.023 -6.137 0.484 9.339 Atomic orbital electron populations 1.20085 0.90349 1.01614 1.01135 1.20041 0.96132 0.92669 1.09135 1.21220 0.91997 0.99021 1.14573 1.23492 0.98090 0.79242 0.97138 1.17771 0.83042 0.90426 0.91915 0.90874 1.59416 1.18230 1.06871 1.53200 1.21759 1.14958 1.27135 0.95193 0.92349 1.25004 0.96780 0.94000 0.97637 1.69873 1.25339 1.23803 1.33747 0.86442 0.79577 0.77461 0.83763 1.20469 1.20951 1.19736 1.83972 1.27794 1.23406 1.71334 1.21906 0.81974 0.96139 1.10911 1.20093 1.00888 0.88463 1.02378 0.92224 0.92468 0.92112 0.84512 0.83526 0.87066 0.92316 0.91147 0.91305 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.18 36.01 0.37 -0.70 15 2 C -0.18 -3.40 6.16 -104.74 -0.65 -4.04 15 3 C -0.25 -5.45 10.76 -39.71 -0.43 -5.88 15 4 C 0.07 1.74 6.09 -35.63 -0.22 1.52 15 5 C 0.28 7.24 3.04 -70.01 -0.21 7.03 15 6 H 0.07 2.04 8.11 -51.93 -0.42 1.61 15 7 N -0.85 -20.86 9.18 -6.65 -0.06 -20.92 15 8 C -0.55 -15.26 8.65 -34.44 -0.30 -15.55 15 9 H 0.06 1.66 7.75 -52.49 -0.41 1.26 15 10 C 0.07 1.88 5.34 -17.82 -0.10 1.78 15 11 N -0.89 -24.56 12.17 55.43 0.67 -23.89 15 12 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 15 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 16 O -0.17 -3.87 10.57 5.72 0.06 -3.81 15 17 C -0.06 -1.15 7.32 -35.62 -0.26 -1.41 15 18 C -0.06 -0.84 10.21 36.01 0.37 -0.47 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.69 7.15 -51.93 -0.37 0.32 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.14 2.81 8.06 -52.48 -0.42 2.39 15 23 H 0.35 8.87 7.78 -39.29 -0.31 8.56 15 24 H 0.32 7.64 8.92 -39.29 -0.35 7.29 15 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.07 0.89 8.14 -51.92 -0.42 0.46 15 28 H 0.08 0.88 7.14 -51.93 -0.37 0.51 15 LS Contribution 246.32 15.07 3.71 3.71 Total: -1.00 -29.03 246.32 -5.53 -34.56 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -3.47 Total: 12.02 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.42 Total: -17.72 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.61 Total: -44.81 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: 0.06 Total: -3.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.03 -5.53 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095662205.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.219 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds