Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41378 * 126.57875 * 2 1 4 4 C 1.34520 * 106.83779 * 179.83472 * 3 2 1 5 5 C 1.50700 * 125.78448 * 180.11490 * 4 3 2 6 6 H 1.08997 * 109.47462 * 20.34328 * 5 4 3 7 7 N 1.46899 * 109.46977 * 140.34654 * 5 4 3 8 8 C 1.50708 * 109.46935 * 260.34016 * 5 4 3 9 9 H 1.07994 * 119.99958 * 0.02562 * 8 5 4 10 10 C 1.37880 * 119.99863 * 180.02562 * 8 5 4 11 11 N 1.31509 * 120.00186 * 180.02562 * 10 8 5 12 12 Si 1.86804 * 119.99734 * 0.02562 * 10 8 5 13 13 H 1.48502 * 109.47040 * 90.00123 * 12 10 8 14 14 H 1.48502 * 109.46898 * 209.99864 * 12 10 8 15 15 H 1.48491 * 109.47486 * 330.00103 * 12 10 8 16 16 O 1.34300 * 108.41931 * 0.43114 * 4 3 2 17 17 C 1.34298 * 109.47772 * 359.72165 * 16 4 3 18 18 C 1.50700 * 125.78784 * 180.02562 * 17 16 4 19 19 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 22 22 H 1.08003 * 126.58126 * 359.97438 * 3 2 1 23 23 H 1.00902 * 110.99819 * 296.04576 * 7 5 4 24 24 H 1.00905 * 111.00361 * 59.99385 * 7 5 4 25 25 H 0.96998 * 119.99988 * 180.02562 * 11 10 8 26 26 H 1.09005 * 109.46604 * 269.95496 * 18 17 16 27 27 H 1.09002 * 109.47365 * 29.95473 * 18 17 16 28 28 H 1.08999 * 109.47089 * 149.96200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6810 0.0037 5 6 4.8580 1.5340 0.0076 6 1 4.6111 2.5339 0.3643 7 7 5.8626 0.9319 0.8943 8 6 5.4112 1.6220 -1.3915 9 1 4.9128 1.1117 -2.2023 10 6 6.5537 2.3541 -1.6363 11 7 7.0363 2.4313 -2.8572 12 14 7.4161 3.2362 -0.2335 13 1 8.4248 2.3315 0.3744 14 1 8.0916 4.4519 -0.7542 15 1 6.4179 3.6263 0.7942 16 8 3.5847 -0.6617 -0.0036 17 6 2.3086 -1.0802 -0.0059 18 6 1.8522 -2.5164 -0.0132 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 2.0367 2.1690 -0.0004 23 1 5.5405 0.9206 1.8505 24 1 6.1084 0.0036 0.5846 25 1 7.8402 2.9460 -3.0293 26 1 1.7415 -2.8571 -1.0427 27 1 2.5906 -3.1350 0.4969 28 1 0.8942 -2.5958 0.5006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095674082.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = 0.097775 kcal Electronic energy + Delta-G solvation = -12173.475976 eV Core-core repulsion = 9997.609204 eV Total energy + Delta-G solvation = -2175.866772 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.94989 -35.00795 -33.76446 -31.91184 -30.93595 -28.34287 -26.58912 -24.87397 -21.60758 -20.66292 -18.47062 -16.97813 -15.87648 -15.49268 -14.78813 -14.24586 -13.80709 -13.41620 -12.91501 -12.70200 -12.57957 -12.30168 -12.04884 -11.90021 -11.85574 -11.12082 -10.72032 -10.51978 -9.93755 -9.38791 -8.91500 -8.59207 -7.85778 -7.46452 -6.05868 -4.17912 2.37070 3.21232 3.53671 3.56546 3.61317 3.70894 4.59865 5.18867 5.21302 5.29236 5.42140 5.54721 5.62323 5.80346 5.84643 5.87173 6.00579 6.06805 6.43121 6.50207 6.77871 6.87048 7.20918 7.43373 7.80639 8.10798 8.25856 8.60204 8.92876 9.54336 11.03485 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.057271 B = 0.009898 C = 0.009834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.785915 B = 2828.074284 C = 2846.461880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.180 4.180 3 C -0.236 4.236 4 C 0.021 3.979 5 C 0.258 3.742 6 H 0.072 0.928 7 N -0.839 5.839 8 C -0.525 4.525 9 H 0.073 0.927 10 C 0.084 3.916 11 N -0.895 5.895 12 Si 0.938 3.062 13 H -0.278 1.278 14 H -0.316 1.316 15 H -0.274 1.274 16 O -0.171 6.171 17 C -0.051 4.051 18 C -0.064 4.064 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.139 0.861 23 H 0.313 0.687 24 H 0.341 0.659 25 H 0.266 0.734 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -5.779 7.524 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.181 4.181 3 C -0.256 4.256 4 C -0.032 4.032 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.368 5.368 8 C -0.563 4.563 9 H 0.091 0.909 10 C -0.121 4.121 11 N -0.532 5.532 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.245 1.245 15 H -0.199 1.199 16 O -0.068 6.068 17 C -0.101 4.101 18 C -0.120 4.120 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.157 0.843 23 H 0.125 0.875 24 H 0.155 0.845 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.909 -5.310 7.179 12.614 hybrid contribution -0.405 -0.120 0.660 0.784 sum -9.314 -5.430 7.838 13.330 Atomic orbital electron populations 1.20096 0.90114 1.01937 1.01174 1.20104 0.96341 0.92612 1.09040 1.21351 0.92092 0.99205 1.12959 1.24430 0.99392 0.79908 0.99495 1.18542 0.80942 0.90618 0.95068 0.91094 1.59283 1.44865 1.28072 1.04606 1.20722 1.11515 1.33675 0.90358 0.90903 1.24991 0.96098 0.94986 0.96002 1.69945 1.22231 1.40567 1.20420 0.85851 0.79427 0.76767 0.81023 1.20399 1.24545 1.19921 1.83942 1.28150 1.23118 1.71548 1.21992 0.81703 0.96305 1.10087 1.20129 1.00929 0.88210 1.02750 0.92204 0.92289 0.91890 0.84264 0.87523 0.84506 0.92493 0.90845 0.91184 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.99 36.01 0.36 -0.65 15 2 C -0.18 -3.20 6.16 -104.74 -0.65 -3.85 15 3 C -0.24 -4.81 10.76 -39.70 -0.43 -5.23 15 4 C 0.02 0.46 6.07 -35.62 -0.22 0.24 15 5 C 0.26 6.19 2.56 -70.01 -0.18 6.01 15 6 H 0.07 1.71 7.19 -51.93 -0.37 1.33 15 7 N -0.84 -18.24 6.75 -6.65 -0.04 -18.28 15 8 C -0.52 -15.10 9.29 -34.44 -0.32 -15.42 15 9 H 0.07 2.33 7.98 -52.49 -0.42 1.91 15 10 C 0.08 2.46 5.47 -17.82 -0.10 2.36 15 11 N -0.90 -27.72 13.96 55.43 0.77 -26.95 15 12 Si 0.94 23.74 26.03 -169.99 -4.42 19.31 15 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 15 14 H -0.32 -8.03 7.11 56.52 0.40 -7.63 15 15 H -0.27 -6.66 6.54 56.52 0.37 -6.29 15 16 O -0.17 -3.66 10.53 5.73 0.06 -3.60 15 17 C -0.05 -0.92 7.32 -35.63 -0.26 -1.18 15 18 C -0.06 -0.81 10.04 36.01 0.36 -0.45 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.68 7.78 -51.93 -0.40 0.27 15 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.14 2.62 8.06 -52.48 -0.42 2.20 15 23 H 0.31 5.85 9.06 -39.29 -0.36 5.49 15 24 H 0.34 7.34 8.88 -39.29 -0.35 6.99 15 25 H 0.27 7.70 8.31 -40.82 -0.34 7.36 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.08 0.81 7.76 -51.93 -0.40 0.41 15 LS Contribution 243.28 15.07 3.67 3.67 Total: -1.00 -32.13 243.28 -4.98 -37.11 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -3.59 Total: 6.91 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.43 Total: -18.17 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.73 Total: -45.23 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.42 Total: 19.31 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.13 -4.98 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095674082.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.208 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds