Wall clock time and date at job start Mon Mar 30 2020 02:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50710 * 109.46838 * 2 1 4 4 O 1.34301 * 125.78790 * 270.16338 * 3 2 1 5 5 C 1.34305 * 109.47642 * 180.23564 * 4 3 2 6 6 C 1.34516 * 108.41613 * 359.77230 * 5 4 3 7 7 C 1.34512 * 125.78971 * 89.99901 * 3 2 1 8 8 C 1.50696 * 126.57853 * 0.03922 * 7 3 2 9 9 H 1.09006 * 109.47511 * 39.70806 * 8 7 3 10 10 N 1.46894 * 109.47259 * 159.71147 * 8 7 3 11 11 C 1.50706 * 109.47259 * 279.70800 * 8 7 3 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 H 1.09006 * 109.46722 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47344 * 299.99917 * 1 2 3 21 21 H 1.08996 * 109.47107 * 60.00367 * 1 2 3 22 22 H 1.09004 * 109.47126 * 240.00500 * 2 1 3 23 23 H 1.08997 * 109.47617 * 119.99739 * 2 1 3 24 24 H 1.07998 * 125.79137 * 179.78717 * 5 4 3 25 25 H 1.08007 * 126.57789 * 180.02562 * 6 5 4 26 26 H 1.00907 * 110.99654 * 296.04440 * 10 8 7 27 27 H 1.00901 * 111.00146 * 59.99612 * 10 8 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2912 2.1624 -1.0894 5 6 2.7267 3.3756 -0.7122 6 6 2.7452 3.4215 0.6320 7 6 2.2945 2.1626 1.0911 8 6 2.1431 1.7320 2.5273 9 1 2.4749 0.6991 2.6339 10 7 2.9589 2.5996 3.3872 11 6 0.6959 1.8391 2.9340 12 1 -0.0406 2.1842 2.2234 13 6 0.3122 1.4967 4.2132 14 7 1.2091 1.0771 5.0787 15 14 -1.4815 1.6303 4.7175 16 1 -1.6307 1.2058 6.1327 17 1 -1.9332 3.0374 4.5720 18 1 -2.3066 0.7531 3.8486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8900 24 1 3.0132 4.1782 -1.3756 25 1 3.0461 4.2595 1.2433 26 1 3.9405 2.4970 3.1772 27 1 2.6706 3.5632 3.3063 28 1 2.1406 1.0081 4.8169 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104664328.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:03 Heat of formation + Delta-G solvation = -0.882027 kcal Electronic energy + Delta-G solvation = -12477.283785 eV Core-core repulsion = 10301.374526 eV Total energy + Delta-G solvation = -2175.909259 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.90867 -35.47363 -33.23044 -32.05797 -30.37452 -27.95128 -25.53472 -22.98809 -22.32516 -20.29250 -18.95277 -16.81716 -16.37414 -15.33714 -14.61667 -14.04041 -13.79109 -13.63676 -13.04212 -12.67368 -12.16967 -11.88700 -11.52340 -11.41835 -10.92555 -10.70413 -10.41147 -10.19262 -9.99441 -9.27487 -8.49177 -8.28058 -7.53966 -7.45474 -6.11765 -3.94052 2.37220 3.37583 3.49892 3.51577 3.63407 3.69619 4.64395 5.24915 5.47280 5.55059 5.68926 5.78247 5.85516 6.04201 6.14038 6.28749 6.43510 6.53330 6.67808 6.81764 6.91776 7.24347 7.28706 7.81294 8.08506 8.39090 8.72940 8.83791 9.11923 9.88492 11.27052 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.013595 C = 0.011524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.191416 B = 2059.076320 C = 2429.081747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C -0.033 4.033 4 O -0.188 6.188 5 C -0.068 4.068 6 C -0.208 4.208 7 C -0.159 4.159 8 C 0.267 3.733 9 H 0.035 0.965 10 N -0.829 5.829 11 C -0.599 4.599 12 H 0.045 0.955 13 C 0.037 3.963 14 N -0.893 5.893 15 Si 1.060 2.940 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.290 1.290 19 H 0.054 0.946 20 H 0.084 0.916 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.191 0.809 25 H 0.136 0.864 26 H 0.300 0.700 27 H 0.325 0.675 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 1.046 -9.215 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.083 4.083 4 O -0.086 6.086 5 C -0.135 4.135 6 C -0.227 4.227 7 C -0.162 4.162 8 C 0.157 3.843 9 H 0.052 0.948 10 N -0.355 5.355 11 C -0.638 4.638 12 H 0.063 0.937 13 C -0.173 4.173 14 N -0.527 5.527 15 Si 0.890 3.110 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.216 1.216 19 H 0.073 0.927 20 H 0.102 0.898 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.208 0.792 25 H 0.154 0.846 26 H 0.110 0.890 27 H 0.137 0.863 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.091 0.263 -7.600 7.605 hybrid contribution 1.406 1.175 -2.164 2.835 sum 1.496 1.438 -9.765 9.983 Atomic orbital electron populations 1.21831 0.94224 1.01533 1.03303 1.19860 0.96548 0.87478 1.02449 1.22195 1.07038 0.95491 0.83533 1.83893 1.66190 1.22865 1.35640 1.23675 1.06544 0.87436 0.95858 1.21634 1.07413 0.99249 0.94441 1.21894 1.01405 0.93206 0.99742 1.17772 0.94471 0.92150 0.79862 0.94751 1.59443 1.04525 1.11455 1.60102 1.21643 0.90632 1.51570 0.99936 0.93665 1.25576 1.05410 0.93422 0.92865 1.70551 1.05144 1.40149 1.36905 0.83699 0.74967 0.76233 0.76145 1.20937 1.21774 1.21647 0.92679 0.89755 0.93653 0.91970 0.89098 0.79177 0.84636 0.88978 0.86258 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.89 37.16 0.37 -2.30 15 2 C -0.03 -0.47 6.26 -27.88 -0.17 -0.65 15 3 C -0.03 -0.68 6.58 -35.62 -0.23 -0.92 15 4 O -0.19 -3.63 10.65 5.71 0.06 -3.57 15 5 C -0.07 -1.17 12.09 29.42 0.36 -0.81 15 6 C -0.21 -4.03 10.12 -39.70 -0.40 -4.43 15 7 C -0.16 -3.52 5.22 -104.75 -0.55 -4.07 15 8 C 0.27 6.63 2.37 -70.02 -0.17 6.47 15 9 H 0.03 0.93 7.35 -51.93 -0.38 0.55 15 10 N -0.83 -19.40 7.51 -6.65 -0.05 -19.45 15 11 C -0.60 -16.49 7.92 -34.44 -0.27 -16.76 15 12 H 0.05 1.28 7.10 -52.48 -0.37 0.90 15 13 C 0.04 1.04 5.39 -17.82 -0.10 0.94 15 14 N -0.89 -26.88 13.51 55.43 0.75 -26.13 15 15 Si 1.06 25.27 29.90 -169.99 -5.08 20.18 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 15 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 20 H 0.08 1.75 6.63 -51.93 -0.34 1.41 15 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.09 1.70 7.36 -51.93 -0.38 1.32 15 24 H 0.19 2.37 8.06 -52.49 -0.42 1.94 15 25 H 0.14 2.41 7.56 -52.48 -0.40 2.01 15 26 H 0.30 6.26 9.06 -39.29 -0.36 5.90 15 27 H 0.33 7.43 8.14 -39.29 -0.32 7.11 15 28 H 0.29 8.72 6.39 -40.82 -0.26 8.46 15 LS Contribution 240.82 15.07 3.63 3.63 Total: -1.00 -30.76 240.82 -5.16 -35.92 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.30 Total: 11.93 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.17 Total: -22.53 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.70 Total: -45.57 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.76 -5.16 -35.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104664328.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.041 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds