Wall clock time and date at job start Mon Mar 30 2020 02:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50710 * 109.46838 * 2 1 4 4 O 1.34301 * 125.78790 * 270.16338 * 3 2 1 5 5 C 1.34305 * 109.47642 * 180.23564 * 4 3 2 6 6 C 1.34516 * 108.41613 * 359.77230 * 5 4 3 7 7 C 1.34512 * 125.78971 * 89.99901 * 3 2 1 8 8 C 1.50696 * 126.57853 * 0.03922 * 7 3 2 9 9 H 1.09006 * 109.47511 * 39.70806 * 8 7 3 10 10 N 1.46894 * 109.47259 * 159.71147 * 8 7 3 11 11 C 1.50706 * 109.47259 * 279.70800 * 8 7 3 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 H 1.09006 * 109.46722 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47344 * 299.99917 * 1 2 3 21 21 H 1.08996 * 109.47107 * 60.00367 * 1 2 3 22 22 H 1.09004 * 109.47126 * 240.00500 * 2 1 3 23 23 H 1.08997 * 109.47617 * 119.99739 * 2 1 3 24 24 H 1.07998 * 125.79137 * 179.78717 * 5 4 3 25 25 H 1.08007 * 126.57789 * 180.02562 * 6 5 4 26 26 H 1.00907 * 110.99654 * 296.04440 * 10 8 7 27 27 H 1.00901 * 111.00146 * 59.99612 * 10 8 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2912 2.1624 -1.0894 5 6 2.7267 3.3756 -0.7122 6 6 2.7452 3.4215 0.6320 7 6 2.2945 2.1626 1.0911 8 6 2.1431 1.7320 2.5273 9 1 2.4749 0.6991 2.6339 10 7 2.9589 2.5996 3.3872 11 6 0.6959 1.8391 2.9340 12 1 -0.0406 2.1842 2.2234 13 6 0.3122 1.4967 4.2132 14 7 1.2091 1.0771 5.0787 15 14 -1.4815 1.6303 4.7175 16 1 -1.6307 1.2058 6.1327 17 1 -1.9332 3.0374 4.5720 18 1 -2.3066 0.7531 3.8486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8900 24 1 3.0132 4.1782 -1.3756 25 1 3.0461 4.2595 1.2433 26 1 3.9405 2.4970 3.1772 27 1 2.6706 3.5632 3.3063 28 1 2.1406 1.0081 4.8169 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104664328.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:03 Heat of formation + Delta-G solvation = -21.995052 kcal Electronic energy + Delta-G solvation = -12478.199314 eV Core-core repulsion = 10301.374526 eV Total energy + Delta-G solvation = -2176.824789 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.42176 -37.34063 -34.74374 -33.92702 -32.18426 -29.49144 -27.55222 -24.57764 -24.11481 -21.86101 -20.59245 -18.78669 -17.95264 -16.91155 -16.45188 -15.65801 -15.49514 -15.32793 -14.86095 -14.31922 -13.73410 -13.43727 -13.38700 -13.05421 -12.57895 -12.47113 -12.11995 -11.92379 -11.77815 -11.09085 -10.47123 -10.24961 -9.37303 -9.11425 -8.32671 -6.17703 0.90434 1.55640 1.63164 1.79625 1.82425 2.20538 2.66362 3.34978 3.88175 4.12203 4.15637 4.25399 4.35343 4.44565 4.61265 4.82118 4.91298 5.02896 5.15070 5.32038 5.41538 5.44185 5.67446 5.99814 6.22437 6.36272 6.73244 6.80743 7.06902 7.71623 9.02437 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.013595 C = 0.011524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.191416 B = 2059.076320 C = 2429.081747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C -0.041 4.041 4 O -0.189 6.189 5 C -0.042 4.042 6 C -0.232 4.232 7 C -0.193 4.193 8 C 0.273 3.727 9 H 0.004 0.996 10 N -0.834 5.834 11 C -0.597 4.597 12 H 0.033 0.967 13 C -0.011 4.011 14 N -0.922 5.922 15 Si 1.104 2.896 16 H -0.286 1.286 17 H -0.280 1.280 18 H -0.272 1.272 19 H 0.080 0.920 20 H 0.045 0.955 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.244 0.756 25 H 0.147 0.853 26 H 0.315 0.685 27 H 0.329 0.671 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 1.698 -10.951 11.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.090 4.090 4 O -0.086 6.086 5 C -0.109 4.109 6 C -0.251 4.251 7 C -0.197 4.197 8 C 0.163 3.837 9 H 0.022 0.978 10 N -0.362 5.362 11 C -0.636 4.636 12 H 0.052 0.948 13 C -0.214 4.214 14 N -0.558 5.558 15 Si 0.928 3.072 16 H -0.212 1.212 17 H -0.206 1.206 18 H -0.197 1.197 19 H 0.099 0.901 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.260 0.740 25 H 0.164 0.836 26 H 0.126 0.874 27 H 0.141 0.859 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.302 0.918 -9.360 9.409 hybrid contribution 1.602 1.005 -1.716 2.554 sum 1.300 1.923 -11.076 11.316 Atomic orbital electron populations 1.21750 0.93812 1.02795 1.01877 1.19937 0.96839 0.86603 1.03178 1.22492 1.06618 0.96375 0.83547 1.83921 1.66085 1.23598 1.34993 1.24594 1.03257 0.87225 0.95806 1.21819 1.08763 0.98713 0.95849 1.21743 1.04003 0.95346 0.98594 1.17403 0.93219 0.90916 0.82143 0.97793 1.59230 1.05403 1.11356 1.60231 1.21846 0.91973 1.50311 0.99486 0.94840 1.26865 1.08511 0.92760 0.93308 1.70670 1.04877 1.42654 1.37579 0.83115 0.71154 0.77081 0.75882 1.21214 1.20571 1.19746 0.90144 0.93550 0.92475 0.88797 0.90739 0.74033 0.83551 0.87378 0.85902 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 9.89 71.98 0.71 -4.23 15 2 C -0.03 -1.00 6.26 29.85 0.19 -0.81 15 3 C -0.04 -1.63 6.58 24.84 0.16 -1.47 15 4 O -0.19 -6.75 10.65 -2.48 -0.03 -6.78 15 5 C -0.04 -1.30 12.09 66.97 0.81 -0.49 15 6 C -0.23 -8.60 10.12 22.19 0.22 -8.38 15 7 C -0.19 -8.52 5.22 -19.95 -0.10 -8.62 15 8 C 0.27 13.87 2.37 43.42 0.10 13.98 15 9 H 0.00 0.25 7.35 -2.38 -0.02 0.23 15 10 N -0.83 -39.65 7.51 -174.95 -1.31 -40.97 15 11 C -0.60 -33.43 7.92 25.60 0.20 -33.23 15 12 H 0.03 1.91 7.10 -2.91 -0.02 1.89 15 13 C -0.01 -0.64 5.39 84.65 0.46 -0.18 15 14 N -0.92 -56.58 13.51 21.45 0.29 -56.29 15 15 Si 1.10 51.02 29.90 68.60 2.05 53.07 15 16 H -0.29 -13.29 7.11 99.48 0.71 -12.59 15 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 19 H 0.08 2.28 8.14 -2.38 -0.02 2.26 15 20 H 0.05 1.92 6.63 -2.39 -0.02 1.91 15 21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.09 2.67 8.14 -2.38 -0.02 2.65 15 23 H 0.07 2.84 7.36 -2.39 -0.02 2.82 15 24 H 0.24 4.68 8.06 -2.91 -0.02 4.65 15 25 H 0.15 4.96 7.56 -2.91 -0.02 4.94 15 26 H 0.32 13.28 9.06 -89.69 -0.81 12.47 15 27 H 0.33 15.10 8.14 -89.69 -0.73 14.37 15 28 H 0.28 17.22 6.39 -92.71 -0.59 16.63 15 Total: -1.00 -66.56 240.82 3.56 -63.00 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.19 Total: 31.40 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.75 Total: -43.44 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -1.02 Total: -97.25 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.03 Total: -6.78 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -66.56 3.56 -63.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104664328.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -66.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds