Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.50701 * 126.57424 * 179.72986 * 4 3 2 6 6 H 1.09004 * 109.47166 * 220.02336 * 5 4 3 7 7 N 1.46898 * 109.47574 * 340.02745 * 5 4 3 8 8 C 1.50703 * 109.47154 * 100.02734 * 5 4 3 9 9 H 1.08004 * 119.99492 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00295 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00253 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 119.99923 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47179 * 90.00233 * 12 10 8 14 14 H 1.48498 * 109.47152 * 210.00106 * 12 10 8 15 15 H 1.48499 * 109.47194 * 330.00176 * 12 10 8 16 16 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 17 17 C 1.50697 * 125.78872 * 180.11927 * 16 4 3 18 18 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 19 19 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 20 20 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 21 21 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 22 22 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 23 23 H 1.00903 * 110.99733 * 296.04588 * 7 5 4 24 24 H 1.00902 * 111.00348 * 59.99412 * 7 5 4 25 25 H 0.96995 * 120.00517 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.47044 * 180.34181 * 17 16 4 27 27 H 1.09006 * 109.47030 * 300.33658 * 17 16 4 28 28 H 1.08998 * 109.47398 * 60.33750 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 4.8731 1.4852 -0.0154 6 1 5.6143 1.0411 -0.6799 7 7 4.5373 2.8348 -0.4884 8 6 5.4353 1.5676 1.3804 9 1 4.9420 1.0539 2.1924 10 6 6.5787 2.2995 1.6211 11 7 7.0690 2.3718 2.8392 12 14 7.4314 3.1884 0.2168 13 1 6.8780 4.5607 0.0910 14 1 8.8886 3.2657 0.4922 15 1 7.2056 2.4456 -1.0490 16 6 3.5814 -0.7121 -0.0013 17 6 4.7706 -1.6377 -0.0029 18 8 2.2925 -1.0894 -0.0005 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9664 2.1205 0.0004 23 1 4.2187 2.8135 -1.4456 24 1 3.8514 3.2680 0.1115 25 1 7.8736 2.8864 3.0085 26 1 4.4261 -2.6718 -0.0032 27 1 5.3721 -1.4549 -0.8934 28 1 5.3738 -1.4559 0.8866 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104669795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = 2.854989 kcal Electronic energy + Delta-G solvation = -12295.671373 eV Core-core repulsion = 10119.924163 eV Total energy + Delta-G solvation = -2175.747210 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.95922 -35.40125 -32.52344 -32.07666 -31.01269 -28.92645 -26.45289 -24.10880 -22.16196 -20.23869 -18.50932 -16.86376 -15.80338 -15.61493 -14.69404 -14.12477 -13.56800 -13.25800 -13.01119 -12.80176 -12.48095 -12.16571 -12.14782 -11.85402 -11.57268 -10.96228 -10.60412 -10.49591 -9.87118 -9.34092 -8.70867 -8.49710 -7.66575 -7.43500 -5.97231 -4.06637 2.30877 3.33996 3.49494 3.58755 3.63274 3.76715 4.68152 5.12719 5.29971 5.39485 5.57203 5.62038 5.66563 5.84840 5.95285 5.99695 6.09788 6.40700 6.43788 6.64243 6.83944 7.07524 7.25357 7.63947 7.83679 8.22456 8.38304 8.75450 9.03864 9.66416 11.12388 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.048531 B = 0.011448 C = 0.010667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.813093 B = 2445.360250 C = 2624.171330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.042 4.042 3 C -0.201 4.201 4 C -0.159 4.159 5 C 0.245 3.755 6 H 0.048 0.952 7 N -0.839 5.839 8 C -0.512 4.512 9 H 0.069 0.931 10 C 0.080 3.920 11 N -0.902 5.902 12 Si 0.937 3.063 13 H -0.281 1.281 14 H -0.319 1.319 15 H -0.275 1.275 16 C -0.031 4.031 17 C -0.062 4.062 18 O -0.186 6.186 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.137 0.863 23 H 0.309 0.691 24 H 0.334 0.666 25 H 0.263 0.737 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -4.388 -7.243 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.221 4.221 4 C -0.163 4.163 5 C 0.135 3.865 6 H 0.065 0.935 7 N -0.368 5.368 8 C -0.550 4.550 9 H 0.087 0.913 10 C -0.124 4.124 11 N -0.539 5.539 12 Si 0.769 3.231 13 H -0.207 1.207 14 H -0.249 1.249 15 H -0.200 1.200 16 C -0.081 4.081 17 C -0.118 4.118 18 O -0.084 6.084 19 H 0.090 0.910 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.155 0.845 23 H 0.120 0.880 24 H 0.147 0.853 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.327 -4.439 -6.995 11.747 hybrid contribution -0.556 0.393 -0.606 0.911 sum -8.883 -4.047 -7.601 12.372 Atomic orbital electron populations 1.20149 0.85971 1.03351 1.02572 1.22114 0.93443 0.84674 1.08947 1.21344 0.92868 0.98681 1.09190 1.21574 0.97076 0.93980 1.03628 1.18116 0.87907 0.83175 0.97287 0.93472 1.59349 1.49454 1.22971 1.04986 1.20772 1.09942 1.32591 0.91743 0.91284 1.25029 0.96436 0.94952 0.95946 1.69960 1.22345 1.40997 1.20631 0.85860 0.74571 0.80658 0.81990 1.20711 1.24910 1.20025 1.22130 0.82349 0.94746 1.08836 1.20186 0.91555 0.95907 1.04175 1.83844 1.16803 1.34887 1.72859 0.90969 0.91219 0.89940 0.84531 0.87959 0.85270 0.92784 0.92077 0.90495 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.42 36.01 0.38 -0.39 15 2 C -0.04 -0.74 7.32 -35.62 -0.26 -1.00 15 3 C -0.20 -3.86 10.02 -39.70 -0.40 -4.25 15 4 C -0.16 -3.46 5.22 -104.74 -0.55 -4.00 15 5 C 0.24 5.84 2.28 -70.02 -0.16 5.68 15 6 H 0.05 1.16 7.19 -51.93 -0.37 0.79 15 7 N -0.84 -18.22 6.49 -6.65 -0.04 -18.26 15 8 C -0.51 -14.55 9.29 -34.44 -0.32 -14.87 15 9 H 0.07 2.17 7.98 -52.48 -0.42 1.75 15 10 C 0.08 2.34 5.47 -17.82 -0.10 2.25 15 11 N -0.90 -27.99 13.96 55.43 0.77 -27.22 15 12 Si 0.94 24.11 26.03 -169.99 -4.42 19.68 15 13 H -0.28 -7.25 7.11 56.52 0.40 -6.85 15 14 H -0.32 -8.27 7.11 56.52 0.40 -7.87 15 15 H -0.27 -6.86 6.54 56.52 0.37 -6.49 15 16 C -0.03 -0.64 7.32 -35.63 -0.26 -0.90 15 17 C -0.06 -1.07 10.12 36.00 0.36 -0.70 15 18 O -0.19 -3.59 10.65 5.71 0.06 -3.53 15 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.14 2.35 7.56 -52.49 -0.40 1.96 15 23 H 0.31 5.84 9.06 -39.29 -0.36 5.48 15 24 H 0.33 7.03 8.14 -39.29 -0.32 6.71 15 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.09 1.74 8.14 -51.93 -0.42 1.32 15 LS Contribution 242.44 15.07 3.65 3.65 Total: -1.00 -32.51 242.44 -4.85 -37.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.57 Total: 6.51 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.30 Total: -18.20 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.73 Total: -45.48 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: 0.06 Total: -3.53 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.42 Total: 19.68 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.51 -4.85 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104669795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.218 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds