Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34520 * 125.78625 * 2 1 4 4 C 1.41381 * 106.83580 * 180.29744 * 3 2 1 5 5 C 1.50701 * 126.57424 * 179.72986 * 4 3 2 6 6 H 1.09004 * 109.47166 * 220.02336 * 5 4 3 7 7 N 1.46898 * 109.47574 * 340.02745 * 5 4 3 8 8 C 1.50703 * 109.47154 * 100.02734 * 5 4 3 9 9 H 1.08004 * 119.99492 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00295 * 180.02562 * 8 5 4 11 11 N 1.31512 * 120.00253 * 179.97438 * 10 8 5 12 12 Si 1.86797 * 119.99923 * 359.97438 * 10 8 5 13 13 H 1.48501 * 109.47179 * 90.00233 * 12 10 8 14 14 H 1.48498 * 109.47152 * 210.00106 * 12 10 8 15 15 H 1.48499 * 109.47194 * 330.00176 * 12 10 8 16 16 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 17 17 C 1.50697 * 125.78872 * 180.11927 * 16 4 3 18 18 O 1.34302 * 125.79164 * 180.02562 * 2 1 3 19 19 H 1.08994 * 109.47275 * 90.00361 * 1 2 3 20 20 H 1.08999 * 109.46770 * 210.00580 * 1 2 3 21 21 H 1.09001 * 109.47333 * 330.00254 * 1 2 3 22 22 H 1.08002 * 126.57789 * 0.02807 * 3 2 1 23 23 H 1.00903 * 110.99733 * 296.04588 * 7 5 4 24 24 H 1.00902 * 111.00348 * 59.99412 * 7 5 4 25 25 H 0.96995 * 120.00517 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.47044 * 180.34181 * 17 16 4 27 27 H 1.09006 * 109.47030 * 300.33658 * 17 16 4 28 28 H 1.08998 * 109.47398 * 60.33750 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 4.8731 1.4852 -0.0154 6 1 5.6143 1.0411 -0.6799 7 7 4.5373 2.8348 -0.4884 8 6 5.4353 1.5676 1.3804 9 1 4.9420 1.0539 2.1924 10 6 6.5787 2.2995 1.6211 11 7 7.0690 2.3718 2.8392 12 14 7.4314 3.1884 0.2168 13 1 6.8780 4.5607 0.0910 14 1 8.8886 3.2657 0.4922 15 1 7.2056 2.4456 -1.0490 16 6 3.5814 -0.7121 -0.0013 17 6 4.7706 -1.6377 -0.0029 18 8 2.2925 -1.0894 -0.0005 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9664 2.1205 0.0004 23 1 4.2187 2.8135 -1.4456 24 1 3.8514 3.2680 0.1115 25 1 7.8736 2.8864 3.0085 26 1 4.4261 -2.6718 -0.0032 27 1 5.3721 -1.4549 -0.8934 28 1 5.3738 -1.4559 0.8866 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104669795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -20.665501 kcal Electronic energy + Delta-G solvation = -12296.691298 eV Core-core repulsion = 10119.924163 eV Total energy + Delta-G solvation = -2176.767135 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.44181 -37.21845 -34.22985 -33.76283 -32.69751 -30.17358 -28.46424 -25.61428 -23.91846 -21.78262 -20.12652 -19.00954 -17.28674 -17.11964 -16.59279 -16.06041 -15.19659 -14.71402 -14.49143 -14.12317 -14.10269 -13.67159 -13.41370 -13.34546 -13.08589 -12.74806 -12.54818 -12.25588 -11.77713 -11.53547 -10.75366 -10.32178 -9.43461 -8.94030 -8.23871 -6.36770 0.86557 1.51059 1.58105 1.71829 1.77898 2.11949 2.53329 3.10403 3.87374 4.11211 4.15347 4.24246 4.46003 4.61935 4.69657 4.72990 4.79161 4.88003 5.04054 5.14467 5.26977 5.48726 5.58208 5.74478 6.14802 6.28985 6.53101 6.75611 6.98817 7.39620 8.89649 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.048531 B = 0.011448 C = 0.010667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.813093 B = 2445.360250 C = 2624.171330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.031 4.031 3 C -0.224 4.224 4 C -0.191 4.191 5 C 0.256 3.744 6 H 0.042 0.958 7 N -0.840 5.840 8 C -0.509 4.509 9 H 0.022 0.978 10 C 0.027 3.973 11 N -0.949 5.949 12 Si 1.002 2.998 13 H -0.277 1.277 14 H -0.322 1.322 15 H -0.260 1.260 16 C -0.046 4.046 17 C -0.061 4.061 18 O -0.191 6.191 19 H 0.097 0.903 20 H 0.083 0.917 21 H 0.100 0.900 22 H 0.152 0.848 23 H 0.332 0.668 24 H 0.339 0.661 25 H 0.265 0.735 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 -4.366 -9.085 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.081 4.081 3 C -0.244 4.244 4 C -0.195 4.195 5 C 0.145 3.855 6 H 0.060 0.940 7 N -0.370 5.370 8 C -0.547 4.547 9 H 0.041 0.959 10 C -0.172 4.172 11 N -0.589 5.589 12 Si 0.832 3.168 13 H -0.203 1.203 14 H -0.252 1.252 15 H -0.185 1.185 16 C -0.095 4.095 17 C -0.117 4.117 18 O -0.089 6.089 19 H 0.116 0.884 20 H 0.101 0.899 21 H 0.119 0.881 22 H 0.170 0.830 23 H 0.144 0.856 24 H 0.152 0.848 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.737 -4.427 -8.856 13.887 hybrid contribution -0.245 0.327 0.012 0.408 sum -9.982 -4.100 -8.845 13.952 Atomic orbital electron populations 1.20413 0.81894 1.04928 1.04667 1.23106 0.95578 0.83576 1.05820 1.21558 0.92045 1.00112 1.10657 1.21527 0.97414 0.94659 1.05855 1.17717 0.88850 0.84632 0.94253 0.94039 1.59065 1.50002 1.21520 1.06419 1.20931 1.09586 1.31224 0.92972 0.95949 1.25860 0.97281 0.95928 0.98112 1.70086 1.23281 1.42701 1.22856 0.84818 0.73154 0.79466 0.79376 1.20340 1.25219 1.18471 1.22552 0.83441 0.95002 1.08543 1.20226 0.90637 0.97188 1.03659 1.83870 1.16553 1.35694 1.72781 0.88447 0.89854 0.88143 0.83022 0.85567 0.84782 0.92652 0.89218 0.89178 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.42 71.24 0.74 -0.53 15 2 C -0.03 -1.02 7.32 24.83 0.18 -0.84 15 3 C -0.22 -8.25 10.02 22.19 0.22 -8.03 15 4 C -0.19 -8.20 5.22 -19.94 -0.10 -8.30 15 5 C 0.26 12.08 2.28 43.42 0.10 12.18 15 6 H 0.04 2.01 7.19 -2.39 -0.02 1.99 15 7 N -0.84 -35.00 6.49 -174.95 -1.13 -36.14 15 8 C -0.51 -29.53 9.29 25.60 0.24 -29.29 15 9 H 0.02 1.47 7.98 -2.91 -0.02 1.44 15 10 C 0.03 1.59 5.47 84.65 0.46 2.05 15 11 N -0.95 -60.43 13.96 21.45 0.30 -60.13 15 12 Si 1.00 49.61 26.03 68.60 1.79 51.39 15 13 H -0.28 -13.51 7.11 99.48 0.71 -12.80 15 14 H -0.32 -15.98 7.11 99.48 0.71 -15.27 15 15 H -0.26 -12.13 6.54 99.48 0.65 -11.48 15 16 C -0.05 -1.84 7.32 24.83 0.18 -1.66 15 17 C -0.06 -2.07 10.12 71.23 0.72 -1.35 15 18 O -0.19 -7.07 10.65 -2.47 -0.03 -7.09 15 19 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.08 1.50 8.14 -2.39 -0.02 1.49 15 21 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.15 4.93 7.56 -2.91 -0.02 4.91 15 23 H 0.33 11.64 9.06 -89.69 -0.81 10.83 15 24 H 0.34 13.75 8.14 -89.69 -0.73 13.02 15 25 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 26 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.09 2.78 8.14 -2.38 -0.02 2.76 15 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 Total: -1.00 -70.63 242.44 3.24 -67.39 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.43 Total: 20.35 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.74 Total: -35.77 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -0.84 Total: -96.27 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.03 Total: -7.09 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.79 Total: 51.39 kcal Total: -70.63 3.24 -67.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104669795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.721 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds