Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.39765 * 126.09546 * 264.69472 * 12 11 10 14 14 N 1.30841 * 108.32561 * 179.81590 * 13 12 11 15 15 N 1.40067 * 108.38880 * 0.43957 * 14 13 12 16 16 H 0.96996 * 126.04287 * 179.74469 * 15 14 13 17 17 C 1.35250 * 107.91254 * 359.71755 * 15 14 13 18 18 N 1.39207 * 126.22095 * 180.02562 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 25 25 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 26 26 H 1.08000 * 125.83975 * 359.96858 * 13 12 11 27 27 H 0.96994 * 119.99977 * 179.97438 * 18 17 15 28 28 H 0.97000 * 119.99983 * 359.96045 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.9153 -6.8266 -1.1219 14 7 3.7561 -7.7470 -0.7243 15 7 3.8587 -7.6787 0.6709 16 1 4.4099 -8.2472 1.2311 17 6 3.0539 -6.6795 1.0988 18 7 2.8673 -6.2821 2.4198 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.8541 -5.0447 0.8922 25 1 0.8534 -5.0451 -0.8877 26 1 2.6251 -6.6345 -2.1443 27 1 2.2655 -5.5498 2.6256 28 1 3.3391 -6.7376 3.1346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166423025.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = 51.048349 kcal Electronic energy + Delta-G solvation = -11693.797639 eV Core-core repulsion = 9552.433001 eV Total energy + Delta-G solvation = -2141.364638 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.91338 -34.84067 -34.20112 -32.46081 -30.51122 -28.66807 -26.08061 -23.16391 -21.68908 -20.22385 -19.40994 -17.94559 -16.27297 -15.95308 -14.91605 -14.61819 -14.37569 -13.75192 -13.13660 -12.64754 -12.09556 -11.76432 -11.22328 -10.92614 -10.80312 -10.57192 -10.46726 -10.22605 -9.51660 -9.27395 -9.04410 -8.81074 -8.28483 -7.29126 -5.93715 -3.95227 2.32883 2.84111 3.21480 3.34227 3.41705 3.46436 4.07014 4.51386 5.10235 5.41863 5.61378 5.72229 6.07184 6.30867 6.36859 6.52978 6.77824 6.97766 7.07286 7.13878 7.30183 7.51239 7.77724 7.80831 7.94464 8.08735 8.11285 8.52675 9.12904 9.68486 11.17520 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.063556 B = 0.006778 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.448985 B = 4129.944060 C = 4171.388274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.018 3.982 10 C -0.103 4.103 11 C -0.033 4.033 12 C -0.293 4.293 13 C 0.084 3.916 14 N -0.321 5.321 15 N -0.510 5.510 16 H 0.429 0.571 17 C 0.360 3.640 18 N -0.856 5.856 19 H 0.259 0.741 20 H 0.015 0.985 21 H 0.013 0.987 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.180 0.820 27 H 0.420 0.580 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -12.655 3.735 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.019 4.019 10 C -0.141 4.141 11 C -0.071 4.071 12 C -0.309 4.309 13 C -0.102 4.102 14 N -0.144 5.144 15 N -0.225 5.225 16 H 0.271 0.729 17 C 0.133 3.867 18 N -0.406 5.406 19 H 0.068 0.932 20 H 0.034 0.966 21 H 0.032 0.968 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.197 0.803 27 H 0.252 0.748 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.353 -13.479 3.252 14.863 hybrid contribution 0.199 1.474 0.998 1.791 sum 5.552 -12.005 4.250 13.893 Atomic orbital electron populations 1.69974 1.06004 1.26309 1.51381 1.25024 0.94816 0.99143 0.95550 0.86588 0.80174 0.84039 0.77511 1.19804 1.21049 1.21127 1.21346 0.93047 0.91249 1.49826 0.92808 1.19143 0.94132 0.91542 0.97054 1.21624 0.98773 0.93608 1.00057 1.19868 0.94761 0.91271 1.01243 1.19521 1.13073 1.08002 0.90280 1.23521 0.94270 0.92765 0.99652 1.77325 1.24828 1.25438 0.86813 1.45989 1.39790 1.30037 1.06645 0.72859 1.17763 0.92493 0.89786 0.86669 1.41572 1.54531 1.42387 1.02157 0.93179 0.96616 0.96833 0.93545 0.94090 0.92986 0.91835 0.80343 0.74775 0.77789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 15 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 15 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 15 10 C -0.10 -2.16 5.13 -26.73 -0.14 -2.30 15 11 C -0.03 -0.57 5.45 -27.89 -0.15 -0.72 15 12 C -0.29 -4.69 5.38 -104.79 -0.56 -5.26 15 13 C 0.08 1.30 11.95 -17.40 -0.21 1.09 15 14 N -0.32 -4.96 12.69 30.60 0.39 -4.57 15 15 N -0.51 -6.65 7.37 31.10 0.23 -6.42 15 16 H 0.43 4.07 8.96 -182.63 -1.64 2.43 15 17 C 0.36 5.03 8.36 -153.40 -1.28 3.74 15 18 N -0.86 -9.18 9.11 31.11 0.28 -8.90 15 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 15 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.87 7.79 -51.93 -0.40 0.46 15 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.18 2.32 8.06 -52.49 -0.42 1.89 15 27 H 0.42 4.63 8.34 -40.82 -0.34 4.29 15 28 H 0.39 2.96 8.96 -40.82 -0.37 2.60 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -32.95 248.00 -7.37 -40.32 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.83 Total: 2.18 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.89 Total: -16.78 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 1.64 Total: -46.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.95 -7.37 -40.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166423025.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.364 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds