Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.35027 * 126.42346 * 59.71174 * 5 2 1 7 7 C 1.47418 * 103.28556 * 179.97438 * 6 5 2 8 8 C 1.41734 * 127.47258 * 180.09234 * 7 6 5 9 9 H 1.08002 * 120.00043 * 0.27704 * 8 7 6 10 10 C 1.39986 * 120.00068 * 180.28326 * 8 7 6 11 11 N 1.30751 * 120.00037 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99816 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47173 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47036 * 120.00228 * 12 10 8 15 15 H 1.48502 * 109.46941 * 239.99663 * 12 10 8 16 16 N 1.32219 * 105.05674 * 0.34399 * 7 6 5 17 17 O 1.20762 * 111.33206 * 359.78127 * 16 7 6 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 27 27 H 1.08012 * 128.35857 * 0.02877 * 6 5 2 28 28 H 0.96997 * 120.00045 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.7830 -0.3673 -2.5123 7 6 2.5109 -1.3905 -3.2846 8 6 2.5936 -1.5098 -4.6945 9 1 2.0887 -0.7951 -5.3275 10 6 3.3296 -2.5542 -5.2665 11 7 3.9412 -3.4193 -4.5003 12 14 3.4379 -2.7119 -7.1247 13 1 2.6630 -1.6162 -7.7605 14 1 4.8589 -2.6236 -7.5470 15 1 2.8775 -4.0217 -7.5438 16 7 3.0654 -2.1760 -2.3770 17 8 2.8049 -1.8057 -1.2574 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 -1.7488 1.2493 25 1 3.1300 -0.7207 1.2495 26 1 1.6766 -0.2073 2.1393 27 1 1.1933 0.4583 -2.8826 28 1 4.4508 -4.1431 -4.8966 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213858514.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = 28.497954 kcal Electronic energy + Delta-G solvation = -12267.930705 eV Core-core repulsion = 10093.295457 eV Total energy + Delta-G solvation = -2174.635248 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.39326 -36.61112 -33.77535 -31.16118 -28.93188 -27.06856 -26.96367 -25.90099 -21.44055 -20.97644 -19.00692 -16.25177 -15.67756 -15.47759 -14.70884 -13.85396 -13.61195 -13.48432 -12.86783 -12.07598 -12.04776 -11.91518 -11.36993 -11.34146 -11.23231 -10.79854 -10.67413 -10.57033 -10.32260 -9.91814 -9.55026 -8.84497 -8.15688 -7.67686 -6.46059 -4.38897 3.07107 3.17452 3.20171 3.22591 4.08767 4.15890 4.55305 5.16612 5.32733 5.47510 5.48410 5.85225 5.86698 6.00791 6.07552 6.15271 6.16887 6.33903 6.38026 6.52984 6.63071 6.77853 6.81762 7.20030 7.46864 7.48777 8.43219 8.74186 9.03214 10.50794 10.73751 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.075123 B = 0.009248 C = 0.008725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.630172 B = 3026.930797 C = 3208.495242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.284 4.284 7 C 0.162 3.838 8 C -0.449 4.449 9 H 0.083 0.917 10 C 0.069 3.931 11 N -0.777 5.777 12 Si 0.912 3.088 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.276 1.276 16 N -0.408 5.408 17 O 0.036 5.964 18 H 0.056 0.944 19 H 0.057 0.943 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 6.011 6.161 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 C -0.192 4.192 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.307 4.307 7 C 0.015 3.985 8 C -0.487 4.487 9 H 0.101 0.899 10 C -0.150 4.150 11 N -0.405 5.405 12 Si 0.737 3.263 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.135 5.135 17 O -0.013 6.013 18 H 0.076 0.924 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.376 4.779 6.263 8.571 hybrid contribution -0.414 0.584 -1.274 1.461 sum -3.791 5.363 4.989 8.247 Atomic orbital electron populations 1.21860 0.93738 1.02135 1.01465 1.18861 0.94965 0.93906 0.90428 1.21859 1.01433 0.94442 1.01464 1.21806 1.01658 1.00455 0.95702 1.23600 0.99931 0.93541 0.95447 1.23154 1.10346 1.04829 0.92361 1.21631 0.92552 0.89047 0.95248 1.18665 1.30086 1.11509 0.88437 0.89935 1.25833 0.94173 0.94867 1.00104 1.69886 1.23272 1.10910 1.36481 0.86203 0.78558 0.78850 0.82688 1.18641 1.20102 1.20107 1.74815 1.27601 1.22991 0.88068 1.84611 1.53331 1.35270 1.28042 0.92442 0.92352 0.92511 0.92513 0.92442 0.92353 0.92184 0.92185 0.92829 0.84697 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.35 37.16 0.31 -1.63 15 2 C 0.02 0.33 0.94 -155.66 -0.15 0.18 15 3 C -0.13 -1.93 8.36 37.16 0.31 -1.62 15 4 C -0.14 -2.07 8.06 37.16 0.30 -1.77 15 5 C -0.06 -1.38 5.75 -35.45 -0.20 -1.59 15 6 C -0.28 -6.95 10.75 -36.99 -0.40 -7.35 15 7 C 0.16 4.75 7.00 -82.63 -0.58 4.17 15 8 C -0.45 -12.97 9.48 -37.59 -0.36 -13.32 15 9 H 0.08 2.22 7.85 -52.49 -0.41 1.81 15 10 C 0.07 1.93 5.50 -17.36 -0.10 1.84 15 11 N -0.78 -22.87 12.04 55.55 0.67 -22.20 15 12 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 15 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 16 N -0.41 -12.28 10.49 33.33 0.35 -11.93 15 17 O 0.04 0.95 10.55 17.18 0.18 1.13 15 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 19 H 0.06 0.84 8.01 -51.93 -0.42 0.43 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.06 0.84 8.02 -51.93 -0.42 0.43 15 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.14 2.93 8.06 -52.48 -0.42 2.50 15 28 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 LS Contribution 245.38 15.07 3.70 3.70 Total: -1.00 -32.17 245.38 -4.74 -36.91 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.76 Total: -1.69 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.86 Total: -21.10 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 1.02 Total: -34.13 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: 0.18 Total: 1.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.17 -4.74 -36.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213858514.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.412 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds