Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47362 * 2 1 4 4 C 1.53002 * 109.46942 * 240.00516 * 2 1 3 5 5 C 1.50701 * 109.47559 * 120.00272 * 2 1 3 6 6 N 1.29848 * 127.31774 * 240.18513 * 5 2 1 7 7 O 1.20568 * 112.93343 * 180.27540 * 6 5 2 8 8 C 1.33759 * 113.30591 * 359.70910 * 7 6 5 9 9 C 1.39662 * 105.87348 * 0.02562 * 8 7 6 10 10 C 1.41467 * 128.73867 * 179.97438 * 9 8 7 11 11 H 1.08008 * 119.99585 * 194.94225 * 10 9 8 12 12 C 1.39730 * 120.00317 * 14.94023 * 10 9 8 13 13 N 1.31015 * 119.99954 * 170.38908 * 12 10 9 14 14 Si 1.86798 * 119.99918 * 350.38470 * 12 10 9 15 15 H 1.48502 * 109.46786 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47181 * 299.99726 * 14 12 10 17 17 H 1.48495 * 109.46908 * 60.00270 * 14 12 10 18 18 H 1.09003 * 109.46841 * 299.99981 * 1 2 3 19 19 H 1.09002 * 109.46914 * 59.99449 * 1 2 3 20 20 H 1.08996 * 109.46806 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47229 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.46880 * 300.00683 * 3 2 1 23 23 H 1.08999 * 109.46424 * 60.00343 * 3 2 1 24 24 H 1.09004 * 109.47090 * 299.99616 * 4 2 1 25 25 H 1.08995 * 109.47631 * 59.99692 * 4 2 1 26 26 H 1.09004 * 109.47033 * 180.02562 * 4 2 1 27 27 H 1.07999 * 127.05860 * 180.02562 * 8 7 6 28 28 H 0.96998 * 119.99991 * 354.67898 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.7789 -0.2200 2.1729 7 8 3.0323 -1.0220 3.0368 8 6 2.4807 -2.2218 2.8233 9 6 1.7777 -2.1107 1.6217 10 6 1.0174 -3.0944 0.9467 11 1 0.7304 -2.9422 -0.0834 12 6 0.6378 -4.2627 1.6125 13 7 -0.2186 -5.0842 1.0574 14 14 1.3517 -4.6534 3.2939 15 1 0.7922 -5.9394 3.7824 16 1 2.8290 -4.7630 3.1912 17 1 1.0006 -3.5684 4.2449 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 3.1301 1.4425 -0.0005 22 1 1.6766 1.9563 -0.8899 23 1 1.6767 1.9562 0.8900 24 1 1.6766 -1.7489 -1.2494 25 1 1.6766 -0.2074 -2.1393 26 1 3.1300 -0.7216 -1.2491 27 1 2.5623 -3.0966 3.4513 28 1 -0.6478 -4.8451 0.2210 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213858596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = 33.251374 kcal Electronic energy + Delta-G solvation = -12636.646525 eV Core-core repulsion = 10462.217401 eV Total energy + Delta-G solvation = -2174.429124 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.93840 -36.68386 -33.97625 -31.19445 -30.27461 -26.85272 -26.68671 -25.57465 -21.95376 -20.76053 -18.83977 -17.88781 -16.23758 -15.94725 -14.35432 -14.03310 -13.58419 -13.52329 -13.00791 -12.74379 -11.84367 -11.78800 -11.37453 -11.28089 -11.13102 -10.54869 -10.52086 -10.50523 -9.82661 -9.70566 -9.47332 -9.18285 -8.50028 -8.11948 -7.26320 -4.54880 2.92160 3.14233 3.19175 3.40976 3.65739 4.02031 4.83859 5.06442 5.16570 5.34102 5.54917 5.79377 5.97099 6.10522 6.20046 6.26032 6.36497 6.41296 6.45587 6.54034 6.70011 6.87650 6.92753 7.11553 7.20394 7.59154 8.14884 8.29056 8.71787 9.86581 10.08022 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.015666 C = 0.012270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.602376 B = 1786.863893 C = 2281.401324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 C -0.132 4.132 4 C -0.136 4.136 5 C -0.042 4.042 6 N -0.374 5.374 7 O 0.079 5.921 8 C -0.314 4.314 9 C 0.011 3.989 10 C -0.484 4.484 11 H 0.083 0.917 12 C 0.044 3.956 13 N -0.829 5.829 14 Si 1.063 2.937 15 H -0.287 1.287 16 H -0.269 1.269 17 H -0.262 1.262 18 H 0.048 0.952 19 H 0.049 0.951 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.183 0.817 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 5.058 -1.309 5.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 C -0.189 4.189 4 C -0.194 4.194 5 C -0.203 4.203 6 N -0.076 5.076 7 O 0.006 5.994 8 C -0.392 4.392 9 C 0.005 3.995 10 C -0.515 4.515 11 H 0.101 0.899 12 C -0.174 4.174 13 N -0.453 5.453 14 Si 0.891 3.109 15 H -0.214 1.214 16 H -0.196 1.196 17 H -0.188 1.188 18 H 0.067 0.933 19 H 0.068 0.932 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.200 0.800 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.854 5.039 0.002 5.370 hybrid contribution -0.494 0.319 -1.566 1.672 sum 1.361 5.358 -1.564 5.745 Atomic orbital electron populations 1.21820 0.94058 1.03106 1.00396 1.18572 0.95084 0.93365 0.90162 1.21754 1.01020 0.95279 1.00859 1.21851 1.00621 1.01477 0.95479 1.24322 1.04058 0.93572 0.98310 1.72904 1.16984 1.17221 1.00507 1.84106 1.58619 1.17793 1.38869 1.25610 1.15400 0.91171 1.06972 1.20118 0.95093 0.91837 0.92459 1.19836 1.29995 1.01673 0.99981 0.89910 1.26981 0.93823 0.91636 1.04948 1.70638 1.19983 1.36024 1.18687 0.83857 0.76435 0.76169 0.74390 1.21414 1.19603 1.18848 0.93260 0.93202 0.91029 0.92818 0.93118 0.92784 0.91252 0.93098 0.93231 0.80048 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.41 37.16 0.31 -2.20 15 2 C 0.03 0.57 0.96 -155.66 -0.15 0.43 15 3 C -0.13 -2.26 8.03 37.16 0.30 -1.96 15 4 C -0.14 -2.49 8.41 37.16 0.31 -2.18 15 5 C -0.04 -1.00 5.81 -79.61 -0.46 -1.46 15 6 N -0.37 -9.10 11.35 34.99 0.40 -8.70 15 7 O 0.08 1.94 11.06 18.00 0.20 2.14 15 8 C -0.31 -7.87 10.03 31.26 0.31 -7.56 15 9 C 0.01 0.27 5.97 -104.32 -0.62 -0.35 15 10 C -0.48 -12.76 8.70 -37.80 -0.33 -13.09 15 11 H 0.08 2.19 5.94 -52.48 -0.31 1.88 15 12 C 0.04 1.14 5.51 -17.34 -0.10 1.05 15 13 N -0.83 -22.12 13.67 55.54 0.76 -21.36 15 14 Si 1.06 23.80 24.57 -169.99 -4.18 19.63 15 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 16 H -0.27 -5.73 6.71 56.52 0.38 -5.35 15 17 H -0.26 -5.73 6.64 56.52 0.38 -5.36 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.47 6.73 -51.93 -0.35 1.12 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.07 1.39 6.10 -51.93 -0.32 1.07 15 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.18 4.24 2.90 -52.49 -0.15 4.09 15 28 H 0.28 7.35 8.73 -40.82 -0.36 6.99 15 LS Contribution 230.32 15.07 3.47 3.47 Total: -1.00 -27.54 230.32 -3.06 -30.60 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.29 Total: 1.57 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -0.42 Total: -27.33 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 1.16 Total: -30.07 kcal Atomic # 8 Polarization: 1.94 SS G_CDS: 0.20 Total: 2.14 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.18 Total: 19.63 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.54 -3.06 -30.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213858596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.849 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds