Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 N 1.46501 * 109.47523 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00382 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00206 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47157 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47069 * 119.99989 * 13 11 9 16 16 H 1.48497 * 109.47396 * 240.00249 * 13 11 9 17 17 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 18 18 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 19 19 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 20 20 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 21 21 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 22 22 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 23 23 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 24 24 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 25 25 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 26 26 H 0.97005 * 119.99858 * 0.02562 * 8 7 6 27 27 H 0.96994 * 120.00211 * 179.97438 * 12 11 9 28 28 H 1.07995 * 126.12756 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 7 6.8621 -2.0034 -1.1807 9 6 7.8151 -1.8499 -2.1519 10 1 7.6893 -1.0990 -2.9180 11 6 8.9428 -2.6593 -2.1520 12 7 9.0959 -3.5747 -1.2188 13 14 10.2431 -2.4494 -3.4766 14 1 9.8373 -1.3598 -4.4004 15 1 11.5419 -2.1040 -2.8449 16 1 10.3841 -3.7169 -4.2372 17 6 2.3031 -1.0942 -0.0009 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 1.9950 2.1577 0.0033 22 1 5.3226 -1.3844 0.9319 23 1 4.4727 -2.5684 -0.0899 24 1 5.1235 -1.2900 -2.1125 25 1 5.9734 -0.1060 -1.0907 26 1 6.9749 -2.6781 -0.4928 27 1 9.8836 -4.1405 -1.2190 28 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223026774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = 83.150469 kcal Electronic energy + Delta-G solvation = -11572.525235 eV Core-core repulsion = 9432.552649 eV Total energy + Delta-G solvation = -2139.972586 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.97974 -35.48917 -33.26793 -31.59977 -30.84824 -28.19692 -25.76154 -23.80472 -21.96462 -20.53003 -19.89873 -17.37046 -16.33463 -15.30757 -14.54690 -14.24663 -13.86770 -13.45861 -13.20080 -13.06828 -12.67840 -12.65025 -11.86737 -11.33656 -11.27657 -10.91018 -10.82274 -10.28810 -10.09812 -9.80782 -9.20032 -8.94709 -8.14227 -7.02259 -5.82667 -3.12984 2.11756 2.75228 2.94998 3.41349 3.47265 3.49706 4.54033 4.74709 4.97804 5.27219 5.35608 5.47428 5.51765 5.56589 5.71371 5.72663 5.93668 6.02809 6.05958 6.24422 6.61530 6.71179 6.86893 7.26461 7.66797 7.93156 8.35099 9.46708 9.99067 10.34747 11.40215 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.095161 B = 0.006123 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.167662 B = 4571.575415 C = 4684.787983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.255 4.255 3 C 0.038 3.962 4 N -0.287 5.287 5 N -0.357 5.357 6 C 0.124 3.876 7 C 0.146 3.854 8 N -0.732 5.732 9 C -0.240 4.240 10 H 0.072 0.928 11 C -0.013 4.013 12 N -0.933 5.933 13 Si 0.911 3.089 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.053 3.947 18 H 0.057 0.943 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.178 0.822 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.384 0.616 27 H 0.256 0.744 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 4.532 3.179 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.267 4.267 3 C -0.148 4.148 4 N -0.109 5.109 5 N -0.139 5.139 6 C 0.002 3.998 7 C 0.018 3.982 8 N -0.377 5.377 9 C -0.371 4.371 10 H 0.090 0.910 11 C -0.209 4.209 12 N -0.582 5.582 13 Si 0.741 3.259 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C -0.094 4.094 18 H 0.075 0.925 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.195 0.805 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.218 0.782 27 H 0.066 0.934 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.626 4.856 3.035 14.781 hybrid contribution -0.014 -0.497 -0.474 0.686 sum -13.641 4.359 2.561 14.548 Atomic orbital electron populations 1.19990 0.89674 1.01698 1.01194 1.20085 0.96869 0.92007 1.17741 1.23747 0.90163 0.99583 1.01336 1.77398 1.20986 0.89261 1.23236 1.48684 1.05575 1.04645 1.54987 1.22026 0.83690 0.92093 1.01951 1.20821 0.88127 0.95717 0.93548 1.42208 1.19781 1.41511 1.34204 1.19253 0.98209 1.15018 1.04637 0.90957 1.24763 0.98651 0.98510 0.98952 1.69662 1.29550 1.23906 1.35079 0.86061 0.81601 0.77285 0.80921 1.20454 1.21725 1.21752 1.22360 0.84402 0.99973 1.02634 0.92457 0.92473 0.92210 0.80516 0.89536 0.88561 0.95884 0.94573 0.78225 0.93434 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.37 36.01 0.37 -0.25 15 2 C -0.26 -3.28 6.10 -105.05 -0.64 -3.92 15 3 C 0.04 0.53 11.96 -17.36 -0.21 0.32 15 4 N -0.29 -5.01 12.42 30.62 0.38 -4.63 15 5 N -0.36 -5.87 3.68 -61.37 -0.23 -6.09 15 6 C 0.12 2.09 6.62 -4.05 -0.03 2.07 15 7 C 0.15 3.11 6.44 -4.04 -0.03 3.09 15 8 N -0.73 -18.82 5.60 -59.91 -0.34 -19.16 15 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 15 10 H 0.07 2.03 7.83 -52.48 -0.41 1.62 15 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 15 12 N -0.93 -28.21 13.06 55.49 0.72 -27.49 15 13 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 15 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 15 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 17 C 0.05 0.73 11.36 -17.22 -0.20 0.53 15 18 H 0.06 0.50 8.14 -51.93 -0.42 0.07 15 19 H 0.06 0.46 8.14 -51.93 -0.42 0.04 15 20 H 0.06 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.18 1.89 8.06 -52.49 -0.42 1.47 15 22 H 0.09 1.46 8.14 -51.93 -0.42 1.03 15 23 H 0.10 1.43 8.07 -51.93 -0.42 1.01 15 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.38 10.07 7.67 -40.82 -0.31 9.75 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 28 H 0.17 1.74 8.06 -52.49 -0.42 1.32 15 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -32.31 250.82 -5.33 -37.64 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.66 Total: 4.01 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.97 Total: -5.64 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.54 Total: -57.37 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.31 -5.33 -37.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223026774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.789 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds