Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 N 1.46501 * 109.47523 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00382 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00206 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47157 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47069 * 119.99989 * 13 11 9 16 16 H 1.48497 * 109.47396 * 240.00249 * 13 11 9 17 17 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 18 18 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 19 19 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 20 20 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 21 21 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 22 22 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 23 23 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 24 24 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 25 25 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 26 26 H 0.97005 * 119.99858 * 0.02562 * 8 7 6 27 27 H 0.96994 * 120.00211 * 179.97438 * 12 11 9 28 28 H 1.07995 * 126.12756 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 7 6.8621 -2.0034 -1.1807 9 6 7.8151 -1.8499 -2.1519 10 1 7.6893 -1.0990 -2.9180 11 6 8.9428 -2.6593 -2.1520 12 7 9.0959 -3.5747 -1.2188 13 14 10.2431 -2.4494 -3.4766 14 1 9.8373 -1.3598 -4.4004 15 1 11.5419 -2.1040 -2.8449 16 1 10.3841 -3.7169 -4.2372 17 6 2.3031 -1.0942 -0.0009 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 1.9950 2.1577 0.0033 22 1 5.3226 -1.3844 0.9319 23 1 4.4727 -2.5684 -0.0899 24 1 5.1235 -1.2900 -2.1125 25 1 5.9734 -0.1060 -1.0907 26 1 6.9749 -2.6781 -0.4928 27 1 9.8836 -4.1405 -1.2190 28 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223026774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 61.149332 kcal Electronic energy + Delta-G solvation = -11573.479276 eV Core-core repulsion = 9432.552649 eV Total energy + Delta-G solvation = -2140.926627 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.08295 -37.25640 -34.86324 -32.99623 -32.32153 -29.69456 -26.99877 -25.52092 -23.66654 -21.72488 -21.02577 -19.35441 -17.65821 -16.81988 -16.33297 -15.69555 -15.27042 -15.07867 -14.79618 -14.11260 -13.82642 -13.64810 -13.13106 -12.96317 -12.73672 -12.65316 -12.54042 -12.13743 -11.90023 -11.39930 -11.04730 -10.40016 -9.20237 -9.14195 -8.03477 -5.35032 1.01852 1.44881 1.46134 1.55341 1.59633 1.92866 2.51490 3.30253 3.54002 3.94603 4.02085 4.11680 4.19558 4.32658 4.52143 4.63243 4.87807 4.94118 5.04476 5.07247 5.30858 5.36220 5.41214 5.83013 6.15133 6.20191 6.82353 7.25268 7.92030 8.20149 9.19661 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.095161 B = 0.006123 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.167662 B = 4571.575415 C = 4684.787983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.256 4.256 3 C 0.038 3.962 4 N -0.342 5.342 5 N -0.376 5.376 6 C 0.139 3.861 7 C 0.154 3.846 8 N -0.741 5.741 9 C -0.255 4.255 10 H 0.071 0.929 11 C -0.068 4.068 12 N -0.964 5.964 13 Si 0.978 3.022 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.287 1.287 17 C 0.048 3.952 18 H 0.064 0.936 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.205 0.795 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.380 0.620 27 H 0.255 0.745 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 4.626 2.883 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.267 4.267 3 C -0.148 4.148 4 N -0.163 5.163 5 N -0.159 5.159 6 C 0.017 3.983 7 C 0.027 3.973 8 N -0.385 5.385 9 C -0.386 4.386 10 H 0.089 0.911 11 C -0.261 4.261 12 N -0.614 5.614 13 Si 0.806 3.194 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.214 1.214 17 C -0.098 4.098 18 H 0.083 0.917 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.222 0.778 22 H 0.101 0.899 23 H 0.138 0.862 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.212 0.788 27 H 0.064 0.936 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -15.059 4.973 2.737 16.094 hybrid contribution 0.305 -0.461 -0.370 0.665 sum -14.754 4.512 2.367 15.609 Atomic orbital electron populations 1.20067 0.86906 1.03132 1.02109 1.20578 0.98677 0.91159 1.16297 1.24361 0.89539 1.01387 0.99510 1.77348 1.23108 0.90177 1.25684 1.48608 1.06101 1.04402 1.56746 1.21727 0.83704 0.93375 0.99504 1.20749 0.87363 0.93843 0.95361 1.42323 1.20726 1.41930 1.33521 1.19578 0.99087 1.14844 1.05122 0.91117 1.25600 1.00756 0.98448 1.01289 1.69796 1.30155 1.24727 1.36747 0.85025 0.78607 0.77429 0.78360 1.19384 1.21627 1.21375 1.23021 0.83288 1.01857 1.01627 0.91685 0.91038 0.90869 0.77823 0.89883 0.86226 0.96502 0.96563 0.78764 0.93590 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.37 71.24 0.74 -0.23 15 2 C -0.26 -5.94 6.10 -20.14 -0.12 -6.07 15 3 C 0.04 1.00 11.96 85.23 1.02 2.02 15 4 N -0.34 -11.82 12.42 -57.02 -0.71 -12.53 15 5 N -0.38 -12.06 3.68 -348.07 -1.28 -13.34 15 6 C 0.14 4.65 6.62 86.38 0.57 5.22 15 7 C 0.15 6.66 6.44 86.38 0.56 7.22 15 8 N -0.74 -38.56 5.60 -343.45 -1.92 -40.48 15 9 C -0.25 -14.66 9.99 84.03 0.84 -13.82 15 10 H 0.07 4.00 7.83 -2.91 -0.02 3.97 15 11 C -0.07 -3.94 5.50 84.86 0.47 -3.47 15 12 N -0.96 -58.58 13.06 21.65 0.28 -58.30 15 13 Si 0.98 46.43 29.55 68.60 2.03 48.46 15 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 15 H -0.29 -13.63 7.11 99.48 0.71 -12.93 15 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 15 17 C 0.05 1.19 11.36 83.54 0.95 2.14 15 18 H 0.06 0.91 8.14 -2.39 -0.02 0.89 15 19 H 0.07 0.89 8.14 -2.39 -0.02 0.87 15 20 H 0.07 0.92 8.14 -2.38 -0.02 0.90 15 21 H 0.21 3.96 8.06 -2.91 -0.02 3.93 15 22 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.12 3.40 8.07 -2.38 -0.02 3.38 15 24 H 0.02 0.75 8.14 -2.39 -0.02 0.73 15 25 H 0.02 0.77 8.14 -2.38 -0.02 0.75 15 26 H 0.38 20.16 7.67 -92.70 -0.71 19.45 15 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 28 H 0.20 3.49 8.06 -2.91 -0.02 3.46 15 Total: -1.00 -68.91 250.82 3.85 -65.06 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.43 Total: 18.12 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.02 Total: -6.98 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -3.63 Total: -124.65 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -68.91 3.85 -65.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223026774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.205 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds