Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30861 * 125.81975 * 2 1 4 4 N 1.40072 * 108.35852 * 179.97438 * 3 2 1 5 5 C 1.46508 * 126.06764 * 180.02562 * 4 3 2 6 6 C 1.35963 * 107.86105 * 359.77478 * 4 3 2 7 7 C 1.35708 * 107.55139 * 0.36120 * 6 4 3 8 8 N 1.40801 * 126.06729 * 179.89231 * 7 6 4 9 9 C 1.46496 * 119.99927 * 359.69834 * 8 7 6 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 H 1.08995 * 109.47312 * 270.00157 * 1 2 3 19 19 H 1.09003 * 109.47008 * 30.00061 * 1 2 3 20 20 H 1.09003 * 109.47506 * 149.99558 * 1 2 3 21 21 H 1.09000 * 109.47373 * 89.97787 * 5 4 3 22 22 H 1.08997 * 109.46619 * 209.97332 * 5 4 3 23 23 H 1.08999 * 109.46613 * 329.97242 * 5 4 3 24 24 H 1.08002 * 126.22830 * 180.26159 * 6 4 3 25 25 H 0.96998 * 119.99881 * 179.69096 * 8 7 6 26 26 H 1.09001 * 109.47001 * 59.99655 * 9 8 7 27 27 H 1.09000 * 109.47574 * 299.99871 * 9 8 7 28 28 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0611 0.0000 4 7 3.6090 0.6408 0.0006 5 6 4.7872 1.5117 0.0013 6 6 3.6185 -0.7188 0.0060 7 6 2.3275 -1.1371 0.0006 8 7 1.8897 -2.4753 0.0014 9 6 2.8678 -3.5659 0.0019 10 6 2.1453 -4.8885 0.0033 11 1 1.0657 -4.9140 0.0034 12 6 2.8627 -6.0659 0.0045 13 7 2.2323 -7.2201 0.0053 14 14 4.7302 -6.0218 0.0037 15 1 5.2257 -6.0082 1.4035 16 1 5.2535 -7.2230 -0.6951 17 1 5.1961 -4.7988 -0.6981 18 1 -0.3634 0.0000 1.0276 19 1 -0.3633 0.8900 -0.5139 20 1 -0.3634 -0.8899 -0.5139 21 1 5.0786 1.7278 1.0292 22 1 5.6087 1.0118 -0.5118 23 1 4.5506 2.4432 -0.5129 24 1 4.4941 -1.3510 0.0118 25 1 0.9405 -2.6750 0.0017 26 1 3.4930 -3.4928 0.8917 27 1 3.4928 -3.4939 -0.8882 28 1 2.7371 -8.0484 0.0057 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227485987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = 54.163787 kcal Electronic energy + Delta-G solvation = -11856.977467 eV Core-core repulsion = 9715.747924 eV Total energy + Delta-G solvation = -2141.229543 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.91492 -36.80952 -34.83926 -34.04643 -30.80799 -30.26622 -28.41461 -25.69184 -24.00808 -21.16244 -20.87843 -19.13267 -17.71968 -16.65999 -16.38573 -15.74066 -15.49949 -14.81754 -14.65850 -14.36714 -14.23814 -13.76993 -13.15098 -12.98430 -12.90948 -12.82246 -12.64853 -11.85556 -11.64463 -11.43362 -11.00995 -10.66662 -9.98239 -8.33211 -7.80278 -6.39751 0.96305 1.37758 1.39315 1.50592 1.75271 2.04494 2.33892 3.02295 3.06946 3.79017 4.00045 4.33068 4.51101 4.52306 4.72314 4.73806 4.83121 4.89478 4.99799 5.14281 5.20867 5.40666 5.61876 6.03550 6.25619 6.59315 6.72722 6.93815 7.19936 7.35741 8.82900 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.045094 B = 0.009393 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.773205 B = 2980.349177 C = 3575.373558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.018 3.982 3 N -0.301 5.301 4 N -0.381 5.381 5 C 0.105 3.895 6 C -0.049 4.049 7 C 0.051 3.949 8 N -0.734 5.734 9 C 0.251 3.749 10 C -0.545 4.545 11 H 0.042 0.958 12 C 0.015 3.985 13 N -0.943 5.943 14 Si 0.950 3.050 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.245 1.245 18 H 0.082 0.918 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.176 0.824 25 H 0.395 0.605 26 H 0.006 0.994 27 H 0.008 0.992 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 15.165 -0.091 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 N -0.127 5.127 4 N -0.170 5.170 5 C -0.035 4.035 6 C -0.197 4.197 7 C -0.058 4.058 8 N -0.369 5.369 9 C 0.127 3.873 10 C -0.583 4.583 11 H 0.061 0.939 12 C -0.184 4.184 13 N -0.582 5.582 14 Si 0.773 3.227 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.168 1.168 18 H 0.100 0.900 19 H 0.102 0.898 20 H 0.093 0.907 21 H 0.100 0.900 22 H 0.123 0.877 23 H 0.113 0.887 24 H 0.194 0.806 25 H 0.229 0.771 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.598 16.227 -0.099 17.166 hybrid contribution 0.242 -1.605 0.045 1.623 sum 5.840 14.622 -0.054 15.746 Atomic orbital electron populations 1.20139 0.85096 1.03613 1.03414 1.22435 0.98103 0.88955 1.05546 1.76930 0.87840 1.22896 1.25048 1.48264 1.05073 1.04212 1.59477 1.22055 0.82896 0.94404 1.04166 1.21880 0.98054 0.85414 1.14311 1.18125 0.92683 0.86353 1.08650 1.44017 1.07924 0.99862 1.85143 1.18941 0.89176 0.84672 0.94541 1.21386 0.94302 0.90713 1.51902 0.93938 1.25799 1.04446 0.94514 0.93629 1.70033 1.38334 0.98380 1.51461 0.85675 0.78814 0.78850 0.79400 1.18919 1.20576 1.16847 0.89985 0.89769 0.90663 0.90002 0.87749 0.88707 0.80645 0.77141 0.97582 0.97419 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.29 71.24 0.73 -0.99 15 2 C 0.02 0.62 7.22 43.18 0.31 0.93 15 3 N -0.30 -10.29 12.57 -47.16 -0.59 -10.88 15 4 N -0.38 -11.64 4.04 -368.37 -1.49 -13.13 15 5 C 0.10 1.94 11.48 127.77 1.47 3.40 15 6 C -0.05 -1.70 10.85 83.47 0.91 -0.80 15 7 C 0.05 1.95 6.95 37.59 0.26 2.22 15 8 N -0.73 -31.42 5.79 -343.64 -1.99 -33.42 15 9 C 0.25 12.00 4.40 85.64 0.38 12.38 15 10 C -0.55 -30.92 9.83 25.60 0.25 -30.67 15 11 H 0.04 2.63 7.84 -2.91 -0.02 2.61 15 12 C 0.01 0.84 5.47 84.65 0.46 1.30 15 13 N -0.94 -57.63 13.96 21.44 0.30 -57.33 15 14 Si 0.95 42.60 27.47 68.60 1.88 44.49 15 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 17 H -0.25 -10.14 6.54 99.48 0.65 -9.48 15 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 19 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.07 1.98 7.69 -2.39 -0.02 1.96 15 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.18 5.55 7.85 -2.91 -0.02 5.52 15 25 H 0.39 16.53 7.83 -92.71 -0.73 15.81 15 26 H 0.01 0.30 7.57 -2.39 -0.02 0.29 15 27 H 0.01 0.39 7.20 -2.39 -0.02 0.37 15 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -68.29 246.08 3.25 -65.04 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.37 Total: 17.47 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.77 Total: -12.23 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.77 Total: -114.76 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -68.29 3.25 -65.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227485987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.206 kcal (2) G-P(sol) polarization free energy of solvation -68.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds