Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30486 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48494 * 109.47334 * 269.99846 * 3 2 1 5 5 H 1.48499 * 109.47236 * 30.00416 * 3 2 1 6 6 H 1.48503 * 109.46970 * 150.00118 * 3 2 1 7 7 C 1.40500 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00285 * 165.58154 * 7 2 1 9 9 C 1.40502 * 119.99817 * 345.58144 * 7 2 1 10 10 N 1.30493 * 120.00104 * 336.46735 * 9 7 2 11 11 C 1.50709 * 120.00205 * 156.47149 * 9 7 2 12 12 H 1.08997 * 109.62289 * 55.37789 * 11 9 7 13 13 C 1.53227 * 109.62671 * 175.95571 * 11 9 7 14 14 C 1.52964 * 109.40099 * 174.34277 * 13 11 9 15 15 C 1.52957 * 109.81553 * 296.39854 * 14 13 11 16 16 C 1.53227 * 109.40318 * 63.60212 * 15 14 13 17 17 C 1.51263 * 109.62320 * 295.00140 * 11 9 7 18 18 O 1.20759 * 120.85330 * 8.91026 * 17 11 9 19 19 H 0.97000 * 120.00595 * 0.02562 * 1 2 3 20 20 H 0.96992 * 120.00209 * 353.95633 * 10 9 7 21 21 H 1.09000 * 109.48416 * 54.36363 * 13 11 9 22 22 H 1.08997 * 109.48235 * 294.31711 * 13 11 9 23 23 H 1.09006 * 109.40986 * 176.29616 * 14 13 11 24 24 H 1.08997 * 109.41601 * 56.50817 * 14 13 11 25 25 H 1.09003 * 109.47844 * 183.57864 * 15 14 13 26 26 H 1.09002 * 109.48138 * 303.61843 * 15 14 13 27 27 H 1.08999 * 109.62856 * 65.08710 * 16 15 14 28 28 H 1.09005 * 109.62531 * 185.46299 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 2.4863 2.0465 -1.4000 5 1 1.4362 2.6527 0.7001 6 1 3.5364 1.4403 0.7000 7 6 2.0074 -1.2167 -0.0005 8 1 3.0619 -1.2313 -0.2334 9 6 1.3382 -2.4145 0.3019 10 7 0.2415 -2.3886 1.0086 11 6 1.8869 -3.7292 -0.1898 12 1 2.9181 -3.8433 0.1442 13 6 1.0345 -4.8793 0.3567 14 6 1.5077 -6.1983 -0.2565 15 6 1.2837 -6.1766 -1.7694 16 6 2.1454 -5.0754 -2.3959 17 6 1.8349 -3.7681 -1.7010 18 8 1.5524 -2.7809 -2.3365 19 1 -0.4851 0.8400 -0.0004 20 1 -0.0644 -1.5551 1.3990 21 1 -0.0109 -4.7121 0.0973 22 1 1.1375 -4.9248 1.4408 23 1 0.9457 -7.0235 0.1812 24 1 2.5691 -6.3341 -0.0493 25 1 1.5633 -7.1417 -2.1921 26 1 0.2323 -5.9788 -1.9784 27 1 3.2002 -5.3175 -2.2661 28 1 1.9171 -4.9917 -3.4585 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238554586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = -63.280636 kcal Electronic energy + Delta-G solvation = -12461.548893 eV Core-core repulsion = 10282.933827 eV Total energy + Delta-G solvation = -2178.615066 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.80787 -37.46980 -36.63830 -33.81920 -31.07414 -29.55007 -28.03192 -24.42061 -22.42810 -21.29635 -19.60192 -18.57408 -17.10249 -16.56598 -16.35192 -15.50358 -15.31813 -15.09292 -14.28250 -13.97302 -13.71793 -13.40438 -12.88332 -12.84487 -12.65759 -12.17687 -12.14181 -11.76957 -11.50551 -11.41584 -11.09676 -10.40500 -9.91495 -9.44696 -8.38243 -6.57490 1.27374 1.29476 1.31604 1.46052 2.15372 2.21923 3.15416 3.60611 3.97854 4.06341 4.14564 4.31497 4.51381 4.58017 4.69291 4.80221 4.98546 5.10731 5.21291 5.27013 5.32790 5.38833 5.50202 5.68991 6.02796 6.26843 6.85793 6.89408 7.16451 8.42690 8.46480 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.057248 B = 0.011505 C = 0.010512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.983290 B = 2433.105732 C = 2662.967528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.027 3.973 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.261 3.739 10 N -0.820 5.820 11 C -0.097 4.097 12 H 0.116 0.884 13 C -0.078 4.078 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.156 4.156 17 C 0.357 3.643 18 O -0.489 6.489 19 H 0.280 0.720 20 H 0.310 0.690 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.127 0.873 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -10.220 -2.395 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.084 3.916 10 N -0.446 5.446 11 C -0.117 4.117 12 H 0.134 0.866 13 C -0.116 4.116 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.193 4.193 17 C 0.232 3.768 18 O -0.363 6.363 19 H 0.091 0.909 20 H 0.125 0.875 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.066 0.934 27 H 0.145 0.855 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.336 -10.394 -2.457 11.940 hybrid contribution 0.277 2.312 -0.009 2.328 sum 5.614 -8.083 -2.466 10.145 Atomic orbital electron populations 1.69684 1.09109 1.29834 1.39090 1.26801 0.95479 1.04776 0.91602 0.85248 0.79261 0.76307 0.79021 1.19483 1.19301 1.17649 1.20313 0.97342 0.93440 1.45884 0.91856 1.20534 0.90157 0.91963 0.88941 1.69415 1.18225 1.34983 1.21950 1.20976 1.01571 0.94524 0.94651 0.86648 1.21167 0.97905 0.92575 0.99947 1.21661 1.03069 0.95914 0.94885 1.21536 0.98747 0.98524 0.95682 1.22333 1.04183 0.92417 1.00392 1.25436 0.70290 0.89641 0.91399 1.90409 1.36069 1.40094 1.69718 0.90923 0.87511 0.94484 0.92160 0.89737 0.89397 0.87292 0.93436 0.85502 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.69 11.20 21.92 0.25 -50.44 15 2 C 0.03 1.55 5.19 85.44 0.44 1.99 15 3 Si 0.98 43.14 29.59 68.60 2.03 45.17 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 6 H -0.25 -10.54 7.11 99.48 0.71 -9.84 15 7 C -0.53 -30.88 8.04 23.37 0.19 -30.69 15 8 H 0.06 3.53 7.89 -2.91 -0.02 3.51 15 9 C 0.26 14.67 5.67 43.31 0.25 14.92 15 10 N -0.82 -48.94 12.16 -47.15 -0.57 -49.51 15 11 C -0.10 -4.20 2.72 -12.03 -0.03 -4.23 15 12 H 0.12 4.34 8.14 -2.39 -0.02 4.32 15 13 C -0.08 -2.86 4.56 30.66 0.14 -2.72 15 14 C -0.12 -2.81 5.81 30.57 0.18 -2.63 15 15 C -0.11 -2.43 5.94 30.66 0.18 -2.25 15 16 C -0.16 -4.17 6.17 30.11 0.19 -3.99 15 17 C 0.36 14.90 6.51 29.46 0.19 15.09 15 18 O -0.49 -26.02 16.14 -1.45 -0.02 -26.04 15 19 H 0.28 15.42 8.29 -92.71 -0.77 14.65 15 20 H 0.31 19.59 6.54 -92.71 -0.61 18.98 15 21 H 0.04 1.60 7.81 -2.39 -0.02 1.58 15 22 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.08 1.69 8.14 -2.38 -0.02 1.67 15 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.11 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.13 2.53 8.14 -2.39 -0.02 2.51 15 28 H 0.09 2.24 8.14 -2.38 -0.02 2.22 15 Total: -1.00 -74.41 236.69 3.95 -70.46 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.55 Total: 24.87 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 1.72 Total: -14.51 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -0.33 Total: -99.95 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.02 Total: -26.04 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.41 3.95 -70.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238554586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.180 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds