Wall clock time and date at job start Mon Mar 30 2020 02:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00336 * 2 1 4 4 H 1.48499 * 109.47260 * 239.99720 * 3 2 1 5 5 H 1.48503 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47305 * 119.99595 * 3 2 1 7 7 C 1.37871 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00368 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47670 * 179.97438 * 9 7 2 11 11 C 1.35046 * 126.39496 * 270.00352 * 10 9 7 12 12 N 1.30495 * 108.69888 * 179.75891 * 11 10 9 13 13 C 1.34127 * 109.25615 * 0.38203 * 12 11 10 14 14 C 1.50706 * 125.99145 * 179.88429 * 13 12 11 15 15 C 1.53002 * 109.46925 * 304.68793 * 14 13 12 16 16 N 1.46896 * 109.47243 * 180.02562 * 15 14 13 17 17 C 1.34672 * 108.02031 * 359.61458 * 13 12 11 18 18 H 0.97008 * 120.00088 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47560 * 59.99312 * 9 7 2 20 20 H 1.09002 * 109.47318 * 299.99359 * 9 7 2 21 21 H 1.08001 * 125.64690 * 359.97438 * 11 10 9 22 22 H 1.09000 * 109.47318 * 64.68026 * 14 13 12 23 23 H 1.09000 * 109.47161 * 184.68657 * 14 13 12 24 24 H 1.09004 * 109.46930 * 299.99901 * 15 14 13 25 25 H 1.09004 * 109.47059 * 59.99503 * 15 14 13 26 26 H 1.00906 * 111.00093 * 179.97438 * 16 15 14 27 27 H 1.00896 * 111.00032 * 303.95295 * 16 15 14 28 28 H 1.07998 * 126.59132 * 180.21001 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.7235 -4.2218 -1.0865 12 7 3.5352 -5.1635 -0.6899 13 6 3.5551 -5.1945 0.6509 14 6 4.3635 -6.1388 1.5030 15 6 4.0428 -7.5822 1.1096 16 7 4.8302 -8.5027 1.9406 17 6 2.7307 -4.2300 1.1023 18 1 -0.4851 0.8401 -0.0004 19 1 0.6245 -2.5571 -0.8895 20 1 0.6240 -2.5567 0.8904 21 1 2.5069 -3.9689 -2.1139 22 1 5.4256 -5.9480 1.3495 23 1 4.1145 -5.9844 2.5529 24 1 2.9806 -7.7731 1.2630 25 1 4.2917 -7.7365 0.0597 26 1 4.6358 -9.4632 1.7001 27 1 5.8165 -8.3035 1.8658 28 1 2.5252 -3.9900 2.1350 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238577103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:12 Heat of formation + Delta-G solvation = 41.386040 kcal Electronic energy + Delta-G solvation = -11688.550127 eV Core-core repulsion = 9546.766500 eV Total energy + Delta-G solvation = -2141.783627 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.17647 -35.47679 -33.90563 -32.09346 -30.22615 -27.86188 -26.29404 -23.21307 -22.15689 -20.19758 -19.19870 -16.86241 -16.20221 -15.54371 -14.83034 -14.47256 -14.28998 -13.56397 -13.31949 -12.96212 -12.33616 -11.91573 -11.67531 -11.53515 -11.09403 -11.00340 -10.90204 -10.36324 -9.96195 -9.22694 -8.72448 -8.62395 -8.52830 -7.57948 -6.35971 -4.44623 2.96891 3.17537 3.21944 3.26061 3.78998 3.98268 4.24651 4.69188 4.99119 5.21658 5.47355 5.54251 5.81605 5.86008 6.05774 6.17458 6.38589 6.48731 6.62566 6.89039 7.17096 7.37007 7.44817 7.56216 7.61534 7.77972 8.13803 8.63046 8.87750 9.23731 10.72223 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.076160 B = 0.006992 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.560013 B = 4003.671141 C = 4092.822155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.231 3.769 10 N -0.425 5.425 11 C 0.174 3.826 12 N -0.511 5.511 13 C -0.029 4.029 14 C -0.020 4.020 15 C 0.069 3.931 16 N -0.856 5.856 17 C -0.042 4.042 18 H 0.269 0.731 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.194 0.806 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.337 0.663 27 H 0.337 0.663 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -8.732 1.516 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.112 3.888 10 N -0.102 5.102 11 C -0.109 4.109 12 N -0.231 5.231 13 C -0.160 4.160 14 C -0.059 4.059 15 C -0.061 4.061 16 N -0.385 5.385 17 C -0.180 4.180 18 H 0.079 0.921 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.211 0.789 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.672 -8.636 1.593 9.948 hybrid contribution 0.250 1.362 -0.449 1.456 sum 4.922 -7.274 1.143 8.857 Atomic orbital electron populations 1.69911 1.06111 1.27945 1.48760 1.24954 0.94983 0.99631 0.94176 0.86388 0.79434 0.81695 0.79047 1.19864 1.20890 1.19889 1.21279 0.93742 0.89742 1.53570 0.91669 1.19786 0.87193 0.81996 0.99865 1.46032 1.32794 1.25696 1.05654 1.24635 0.97757 0.94379 0.94118 1.69990 1.20649 1.21220 1.11277 1.20320 1.03763 1.00971 0.90987 1.19615 0.97890 0.91106 0.97308 1.21706 0.97955 0.91978 0.94495 1.58779 1.11433 1.07098 1.61143 1.22373 1.03155 0.99223 0.93258 0.92090 0.93166 0.93394 0.78933 0.91965 0.90724 0.91405 0.94747 0.85115 0.85104 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 13.29 55.43 0.74 -23.82 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 15 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.55 -14.54 9.39 -34.44 -0.32 -14.86 15 8 H 0.07 1.78 7.81 -52.48 -0.41 1.37 15 9 C 0.23 5.61 5.90 -5.19 -0.03 5.58 15 10 N -0.42 -9.33 2.73 -119.87 -0.33 -9.66 15 11 C 0.17 3.60 12.56 -90.38 -1.14 2.47 15 12 N -0.51 -10.56 11.24 -10.87 -0.12 -10.68 15 13 C -0.03 -0.57 6.35 -82.85 -0.53 -1.09 15 14 C -0.02 -0.31 6.04 -27.88 -0.17 -0.48 15 15 C 0.07 0.97 6.76 -3.83 -0.03 0.94 15 16 N -0.86 -9.71 9.62 -10.37 -0.10 -9.81 15 17 C -0.04 -0.86 11.46 -16.56 -0.19 -1.05 15 18 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 19 H 0.05 1.24 8.14 -51.93 -0.42 0.82 15 20 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 21 H 0.19 3.45 8.06 -52.49 -0.42 3.03 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.07 1.08 8.11 -51.93 -0.42 0.66 15 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.34 3.17 9.08 -39.29 -0.36 2.82 15 27 H 0.34 3.37 8.99 -39.29 -0.35 3.02 15 28 H 0.16 2.94 8.06 -52.49 -0.42 2.52 15 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -28.82 250.79 -7.19 -36.01 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.64 Total: 5.39 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.50 Total: -6.82 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.19 Total: -53.98 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.82 -7.19 -36.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238577103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.391 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds