Wall clock time and date at job start Mon Mar 30 2020 01:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34515 * 125.79064 * 2 1 4 4 C 1.41378 * 106.84133 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.84219 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.78974 * 180.02562 * 5 4 3 7 7 H 1.08989 * 109.46950 * 359.97438 * 6 5 4 8 8 C 1.50701 * 109.46675 * 239.99630 * 6 5 4 9 9 H 1.08004 * 120.00056 * 269.81793 * 8 6 5 10 10 C 1.37870 * 120.00313 * 89.81987 * 8 6 5 11 11 N 1.31511 * 119.99962 * 6.99452 * 10 8 6 12 12 Si 1.86802 * 120.00258 * 186.99968 * 10 8 6 13 13 H 1.48497 * 109.47352 * 59.99542 * 12 10 8 14 14 H 1.48504 * 109.47136 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46939 * 299.99476 * 12 10 8 16 16 C 1.52994 * 109.47260 * 119.99899 * 6 5 4 17 17 N 1.46903 * 109.47186 * 185.31871 * 16 6 5 18 18 O 1.34302 * 108.41998 * 0.25885 * 5 4 3 19 19 H 1.08994 * 109.47136 * 90.00125 * 1 2 3 20 20 H 1.09000 * 109.47186 * 210.00202 * 1 2 3 21 21 H 1.09002 * 109.47217 * 329.99611 * 1 2 3 22 22 H 1.07995 * 126.57766 * 0.02562 * 3 2 1 23 23 H 1.08003 * 126.57986 * 180.02562 * 4 3 2 24 24 H 0.97003 * 120.00627 * 180.02562 * 11 10 8 25 25 H 1.09003 * 109.47122 * 305.31870 * 16 6 5 26 26 H 1.09000 * 109.47604 * 65.31136 * 16 6 5 27 27 H 1.00897 * 110.99822 * 56.04099 * 17 16 6 28 28 H 1.00899 * 110.99495 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6885 -1.0502 -0.0017 8 6 4.7308 -2.5063 -1.2329 9 1 4.2214 -3.4583 -1.2060 10 6 5.3446 -2.0855 -2.3935 11 7 6.0801 -0.9953 -2.3904 12 14 5.1315 -3.0639 -3.9705 13 1 3.6911 -3.1210 -4.3269 14 1 5.8866 -2.4060 -5.0670 15 1 5.6472 -4.4422 -3.7714 16 6 4.7298 -2.5211 1.2467 17 7 5.9523 -3.3331 1.3124 18 8 2.2924 -1.0895 -0.0072 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5139 22 1 1.9666 2.1203 0.0004 23 1 4.5212 1.2433 -0.0004 24 1 6.5117 -0.6990 -3.2070 25 1 4.6632 -1.8923 2.1346 26 1 3.8602 -3.1767 1.1999 27 1 6.7753 -2.7498 1.2917 28 1 5.9491 -3.9259 2.1288 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259531193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:10 Heat of formation + Delta-G solvation = -19.606274 kcal Electronic energy + Delta-G solvation = -12264.050919 eV Core-core repulsion = 10087.329715 eV Total energy + Delta-G solvation = -2176.721203 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.21403 -37.06862 -34.30336 -33.82832 -32.78070 -30.43857 -26.88220 -25.72931 -22.46704 -22.41135 -20.77262 -18.70610 -17.37153 -16.90449 -16.55752 -15.99855 -15.37165 -14.80326 -14.48685 -14.06031 -13.77448 -13.65324 -13.49852 -13.10709 -12.73794 -12.68940 -12.50684 -12.44606 -11.57971 -11.19508 -10.60850 -10.56418 -9.33107 -8.87863 -8.14357 -6.20665 1.09884 1.39932 1.42064 1.49021 1.93460 2.35813 2.44481 3.18322 3.88812 4.13397 4.33886 4.36696 4.50973 4.62443 4.73946 4.77961 4.96100 4.96881 5.11524 5.31744 5.52739 5.59880 5.75516 5.89669 6.18782 6.44282 6.64042 6.85539 6.86391 7.42948 8.92711 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.014060 C = 0.011415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.523650 B = 1990.990539 C = 2452.280733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.063 4.063 3 C -0.218 4.218 4 C -0.262 4.262 5 C 0.032 3.968 6 C 0.103 3.897 7 H 0.059 0.941 8 C -0.497 4.497 9 H 0.047 0.953 10 C 0.018 3.982 11 N -0.917 5.917 12 Si 0.950 3.050 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.089 3.911 17 N -0.839 5.839 18 O -0.193 6.193 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.110 0.890 22 H 0.165 0.835 23 H 0.130 0.870 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.052 0.948 27 H 0.340 0.660 28 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 1.668 5.603 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.112 4.112 3 C -0.237 4.237 4 C -0.282 4.282 5 C -0.020 4.020 6 C 0.084 3.916 7 H 0.077 0.923 8 C -0.534 4.534 9 H 0.066 0.934 10 C -0.182 4.182 11 N -0.556 5.556 12 Si 0.776 3.224 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.042 4.042 17 N -0.370 5.370 18 O -0.091 6.091 19 H 0.102 0.898 20 H 0.098 0.902 21 H 0.128 0.872 22 H 0.183 0.817 23 H 0.148 0.852 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.153 0.847 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.297 1.161 4.801 8.811 hybrid contribution 0.563 0.472 -0.179 0.756 sum -6.733 1.633 4.622 8.329 Atomic orbital electron populations 1.20356 0.82302 1.04986 1.03996 1.23244 0.95833 0.84138 1.07975 1.21720 0.92052 1.00079 1.09827 1.21593 0.98421 0.94412 1.13746 1.23808 0.83160 0.95432 0.99578 1.17597 0.87932 0.91786 0.94271 0.92317 1.20963 1.33668 1.03312 0.95485 0.93424 1.25681 0.94317 0.96195 1.01971 1.70001 1.32022 1.24959 1.28610 0.85728 0.77999 0.79300 0.79374 1.20367 1.20721 1.19232 1.21589 0.93030 0.94538 0.95082 1.58358 1.03801 1.27121 1.47687 1.83939 1.17177 1.36040 1.71909 0.89817 0.90236 0.87187 0.81745 0.85214 0.92892 0.96764 0.92953 0.84719 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.42 71.24 0.74 -0.76 15 2 C -0.06 -2.41 7.32 24.83 0.18 -2.22 15 3 C -0.22 -8.50 10.81 22.19 0.24 -8.26 15 4 C -0.26 -12.25 10.78 22.19 0.24 -12.01 15 5 C 0.03 1.59 5.81 24.84 0.14 1.73 15 6 C 0.10 5.31 2.42 -12.29 -0.03 5.28 15 7 H 0.06 3.29 7.32 -2.39 -0.02 3.27 15 8 C -0.50 -28.16 8.02 25.60 0.21 -27.96 15 9 H 0.05 2.75 7.82 -2.91 -0.02 2.73 15 10 C 0.02 1.01 5.45 84.65 0.46 1.47 15 11 N -0.92 -54.10 12.84 21.44 0.28 -53.83 15 12 Si 0.95 45.44 29.54 68.60 2.03 47.47 15 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 16 C 0.09 3.81 6.14 86.30 0.53 4.34 15 17 N -0.84 -32.36 9.35 -186.72 -1.75 -34.10 15 18 O -0.19 -9.12 10.65 -2.53 -0.03 -9.15 15 19 H 0.08 1.91 8.14 -2.39 -0.02 1.90 15 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.11 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.16 5.11 8.06 -2.91 -0.02 5.09 15 23 H 0.13 6.00 8.06 -2.91 -0.02 5.98 15 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 15 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.34 12.74 8.99 -89.70 -0.81 11.93 15 28 H 0.34 10.53 9.08 -89.69 -0.81 9.71 15 Total: -1.00 -66.07 249.22 2.79 -63.28 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.45 Total: 24.72 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 2.71 Total: -38.40 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.47 Total: -87.93 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.03 Total: -9.15 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.07 2.79 -63.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259531193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.676 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds