Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48497 * 109.47641 * 270.00457 * 3 2 1 5 5 H 1.48499 * 109.47040 * 30.00440 * 3 2 1 6 6 H 1.48506 * 109.47043 * 150.00352 * 3 2 1 7 7 C 1.37876 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00083 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.28842 * 123.21044 * 359.97438 * 10 9 7 12 12 C 1.48054 * 108.37770 * 180.81457 * 11 10 9 13 13 H 1.08999 * 114.85299 * 142.77361 * 12 11 10 14 14 C 1.54585 * 107.77666 * 271.42188 * 12 11 10 15 15 C 1.53927 * 105.20549 * 140.06356 * 14 12 11 16 16 C 1.53628 * 106.71963 * 336.95028 * 15 14 12 17 17 C 1.53401 * 107.38828 * 2.32737 * 16 15 14 18 18 H 1.08995 * 113.18115 * 144.45397 * 17 16 15 19 19 O 1.35120 * 123.20399 * 179.97438 * 10 9 7 20 20 H 0.96996 * 119.99417 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46901 * 59.99879 * 9 7 2 22 22 H 1.08992 * 109.47256 * 299.99591 * 9 7 2 23 23 H 1.08995 * 110.29850 * 21.12925 * 14 12 11 24 24 H 1.09007 * 110.29565 * 258.99553 * 14 12 11 25 25 H 1.08996 * 110.00983 * 217.63561 * 15 14 12 26 26 H 1.09002 * 110.04635 * 96.28434 * 15 14 12 27 27 H 1.09007 * 109.86224 * 242.87677 * 16 15 14 28 28 H 1.08998 * 109.97016 * 121.84047 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 7 3.2326 -3.6395 0.0000 12 6 4.0668 -4.8625 0.0198 13 1 3.6681 -5.6793 0.6213 14 6 4.3783 -5.2450 -1.4452 15 6 5.8472 -5.7051 -1.4387 16 6 6.5071 -5.0597 -0.2107 17 6 5.4204 -4.2732 0.5334 18 1 5.5385 -4.2980 1.6167 19 8 5.3263 -2.9358 -0.0019 20 1 -0.4849 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6802 -0.8911 23 1 4.2562 -4.3794 -2.0962 24 1 3.7289 -6.0580 -1.7701 25 1 6.3464 -5.3720 -2.3486 26 1 5.8982 -6.7912 -1.3619 27 1 7.3010 -4.3839 -0.5291 28 1 6.9170 -5.8317 0.4405 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581387.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = -12.667731 kcal Electronic energy + Delta-G solvation = -12283.911792 eV Core-core repulsion = 10107.491467 eV Total energy + Delta-G solvation = -2176.420326 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.07676 -35.68183 -33.58681 -32.38191 -30.01392 -28.18081 -26.50837 -23.07529 -20.73847 -20.36125 -19.25577 -16.75227 -16.66670 -15.53973 -14.63483 -14.56346 -14.02937 -13.50797 -12.86664 -12.47990 -12.26814 -11.98471 -11.69035 -11.27582 -10.97782 -10.88897 -10.62353 -10.50714 -10.28526 -9.92951 -9.51514 -8.89110 -8.59046 -8.38358 -6.00647 -4.00272 2.88878 3.31282 3.38842 3.39925 3.86076 4.43849 4.46615 4.70165 4.88596 5.16465 5.25579 5.30381 5.49432 5.53191 5.64923 5.70218 5.82426 5.89281 6.08557 6.21552 6.43720 6.55442 6.75090 6.97106 7.17505 7.59876 8.46685 8.69002 9.21437 9.57015 11.11941 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.068803 B = 0.009452 C = 0.008802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.859246 B = 2961.569604 C = 3180.455368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.051 3.949 10 C 0.321 3.679 11 N -0.517 5.517 12 C 0.016 3.984 13 H 0.114 0.886 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.116 4.116 17 C 0.037 3.963 18 H 0.096 0.904 19 O -0.353 6.353 20 H 0.264 0.736 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -8.495 -0.425 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.118 0.882 9 C 0.013 3.987 10 C 0.096 3.904 11 N -0.250 5.250 12 C -0.094 4.094 13 H 0.132 0.868 14 C -0.157 4.157 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.021 4.021 18 H 0.114 0.886 19 O -0.259 6.259 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.460 -8.564 -0.518 14.316 hybrid contribution 1.171 0.771 0.065 1.403 sum 12.631 -7.793 -0.453 14.849 Atomic orbital electron populations 1.69884 1.06108 1.26785 1.50766 1.24923 0.94783 0.98585 0.94818 0.86943 0.80452 0.84233 0.78705 1.20071 1.21110 1.18974 1.21029 0.87343 0.96003 1.50730 0.88228 1.18585 0.98517 0.82900 0.98649 1.26434 0.78061 0.98790 0.87159 1.75202 1.29069 0.96732 1.24031 1.24744 0.90611 0.97340 0.96733 0.86792 1.22458 0.95497 1.01823 0.95900 1.22064 0.95712 1.00040 0.98031 1.21962 0.97691 0.98672 0.97078 1.24774 0.97810 0.81519 0.97959 0.88630 1.87197 1.27628 1.32455 1.78600 0.92607 0.93253 0.93747 0.90961 0.91086 0.91542 0.91584 0.90496 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 21.07 27.47 -169.99 -4.67 16.41 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 15 7 C -0.51 -14.82 9.51 -34.44 -0.33 -15.15 15 8 H 0.10 3.18 7.02 -52.48 -0.37 2.81 15 9 C 0.05 1.26 4.67 -29.03 -0.14 1.12 15 10 C 0.32 7.27 7.28 -13.53 -0.10 7.17 15 11 N -0.52 -11.77 9.77 -48.60 -0.47 -12.25 15 12 C 0.02 0.28 5.08 -64.47 -0.33 -0.05 15 13 H 0.11 1.75 8.14 -51.93 -0.42 1.33 15 14 C -0.12 -1.83 6.20 -25.42 -0.16 -1.99 15 15 C -0.12 -1.45 6.79 -25.92 -0.18 -1.62 15 16 C -0.12 -1.42 6.46 -26.20 -0.17 -1.59 15 17 C 0.04 0.59 4.71 -24.75 -0.12 0.48 15 18 H 0.10 1.38 8.14 -51.93 -0.42 0.96 15 19 O -0.35 -6.99 10.71 -17.06 -0.18 -7.17 15 20 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 21 H 0.05 1.17 7.20 -51.93 -0.37 0.80 15 22 H 0.04 1.05 7.57 -51.93 -0.39 0.65 15 23 H 0.07 1.30 7.74 -51.93 -0.40 0.89 15 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.08 0.94 8.11 -51.93 -0.42 0.52 15 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 233.61 15.07 3.52 3.52 Total: -1.00 -31.45 233.61 -6.30 -37.75 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.66 Total: -1.66 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.61 Total: -9.68 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.30 Total: -39.16 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.18 Total: -7.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.45 -6.30 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581387.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.079 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds