Wall clock time and date at job start Mon Mar 30 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.35032 * 126.97982 * 59.68419 * 4 2 1 6 6 N 1.38847 * 125.22664 * 0.02562 * 5 4 2 7 7 O 1.34373 * 109.54277 * 179.89092 * 5 4 2 8 8 C 1.34074 * 111.03896 * 0.39495 * 7 5 4 9 9 C 1.39166 * 108.03676 * 359.76227 * 8 7 5 10 10 C 1.41350 * 127.32967 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99541 * 179.97438 * 10 9 8 12 12 C 1.39565 * 120.00416 * 359.97165 * 10 9 8 13 13 N 1.31092 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00400 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47099 * 60.00080 * 14 12 10 16 16 H 1.48501 * 109.47458 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47299 * 300.00412 * 14 12 10 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.97000 * 119.99662 * 359.97438 * 6 5 4 26 26 H 0.97002 * 119.99702 * 179.97438 * 6 5 4 27 27 H 1.07999 * 125.98694 * 179.80126 * 8 7 5 28 28 H 0.97003 * 120.00029 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7897 -0.3776 -2.5164 6 7 1.0195 0.6999 -2.9333 7 8 2.4106 -1.2477 -3.3307 8 6 3.0698 -2.1792 -2.6270 9 6 2.8813 -1.9111 -1.2745 10 6 3.3963 -2.6374 -0.1767 11 1 3.1741 -2.3214 0.8319 12 6 4.1919 -3.7629 -0.3960 13 7 4.4619 -4.1462 -1.6202 14 14 4.8719 -4.7232 1.0547 15 1 3.7485 -5.2336 1.8809 16 1 5.6800 -5.8655 0.5573 17 1 5.7285 -3.8336 1.8795 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 0.6059 1.2828 -2.2775 26 1 0.8951 0.8695 -3.8802 27 1 3.6467 -2.9946 -3.0377 28 1 5.0152 -4.9283 -1.7727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259625268.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:48 Heat of formation + Delta-G solvation = -7.106464 kcal Electronic energy + Delta-G solvation = -12409.154177 eV Core-core repulsion = 10232.975006 eV Total energy + Delta-G solvation = -2176.179171 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.27870 -35.44736 -33.78099 -32.58880 -29.85718 -26.51114 -26.35187 -24.79909 -21.42568 -19.95110 -18.20208 -17.25028 -15.49097 -15.10641 -14.58483 -14.30748 -14.13603 -13.37803 -12.66670 -12.45568 -12.28397 -11.72112 -11.33707 -11.13711 -10.96486 -10.53985 -10.36930 -9.91572 -9.82286 -9.67678 -9.31056 -9.30717 -7.57094 -6.41164 -5.95090 -4.05231 3.14835 3.21286 3.24967 3.71097 4.02022 4.17280 4.28433 5.52395 5.60744 5.72051 5.83963 5.99566 6.13072 6.32588 6.32793 6.55362 6.68068 6.89527 6.98982 7.26396 7.40203 7.52926 7.81376 8.08663 8.30906 8.52175 8.79163 9.09080 9.23146 9.49415 10.60396 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.041984 B = 0.012617 C = 0.010369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.754950 B = 2218.704778 C = 2699.701512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 C -0.139 4.139 4 C -0.289 4.289 5 C 0.242 3.758 6 N -0.860 5.860 7 O -0.225 6.225 8 C -0.203 4.203 9 C 0.028 3.972 10 C -0.423 4.423 11 H 0.068 0.932 12 C 0.056 3.944 13 N -0.836 5.836 14 Si 0.916 3.084 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.270 1.270 18 H 0.043 0.957 19 H 0.042 0.958 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.407 0.593 26 H 0.385 0.615 27 H 0.219 0.781 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 6.133 1.340 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.197 4.197 4 C -0.298 4.298 5 C 0.093 3.907 6 N -0.415 5.415 7 O -0.124 6.124 8 C -0.270 4.270 9 C 0.026 3.974 10 C -0.456 4.456 11 H 0.086 0.914 12 C -0.153 4.153 13 N -0.468 5.468 14 Si 0.743 3.257 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.196 1.196 18 H 0.062 0.938 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.240 0.760 26 H 0.212 0.788 27 H 0.235 0.765 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.142 5.828 0.983 7.217 hybrid contribution 0.178 -0.252 0.620 0.692 sum -3.964 5.576 1.603 7.026 Atomic orbital electron populations 1.21862 0.96841 1.01371 0.99630 1.19073 0.93177 0.93651 0.96433 1.21856 1.01379 0.96823 0.99628 1.20338 1.14213 1.04507 0.90724 1.17977 0.96072 0.88701 0.87924 1.41259 1.59776 1.31229 1.09189 1.83439 1.55710 1.35181 1.38069 1.25301 1.12526 0.98722 0.90412 1.18785 0.94259 0.91322 0.93067 1.18676 1.25999 1.07899 0.92988 0.91384 1.25624 0.95841 0.97385 0.96480 1.69381 1.33044 1.23721 1.20653 0.86235 0.79099 0.78917 0.81487 1.19554 1.20732 1.19558 0.93754 0.93930 0.92797 0.91061 0.93944 0.92800 0.93755 0.75953 0.78824 0.76547 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.03 37.16 0.34 -2.04 15 2 C 0.00 -0.10 3.10 -91.78 -0.28 -0.38 15 3 C -0.14 -2.38 9.03 37.15 0.34 -2.04 15 4 C -0.29 -7.06 5.11 -102.16 -0.52 -7.58 15 5 C 0.24 5.62 8.10 -15.51 -0.13 5.49 15 6 N -0.86 -14.86 8.51 30.66 0.26 -14.60 15 7 O -0.23 -5.89 10.54 6.13 0.06 -5.83 15 8 C -0.20 -5.77 11.15 31.08 0.35 -5.42 15 9 C 0.03 0.81 6.14 -104.77 -0.64 0.16 15 10 C -0.42 -11.97 9.26 -37.90 -0.35 -12.32 15 11 H 0.07 1.85 7.21 -52.48 -0.38 1.47 15 12 C 0.06 1.51 5.49 -17.37 -0.10 1.42 15 13 N -0.84 -23.01 10.40 55.53 0.58 -22.43 15 14 Si 0.92 20.29 29.56 -169.99 -5.02 15.26 15 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 16 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 15 18 H 0.04 0.69 5.99 -51.93 -0.31 0.38 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.07 1.52 7.34 -51.93 -0.38 1.14 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 24 H 0.04 0.69 6.06 -51.93 -0.31 0.38 15 25 H 0.41 6.11 5.06 -40.82 -0.21 5.90 15 26 H 0.39 5.73 8.95 -40.82 -0.37 5.36 15 27 H 0.22 6.29 5.80 -52.49 -0.30 5.99 15 28 H 0.27 6.94 8.30 -40.82 -0.34 6.60 15 LS Contribution 234.02 15.07 3.53 3.53 Total: -1.00 -30.07 234.02 -4.69 -34.76 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -3.09 Total: 12.02 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -1.00 Total: -22.71 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.84 Total: -37.03 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: 0.06 Total: -5.83 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.07 -4.69 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625268.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.649 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds