Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.16042 * 179.97438 * 4 3 2 6 6 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.44063 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46541 * 90.00365 * 7 6 4 9 9 C 1.50703 * 109.46921 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00043 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99905 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99901 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99984 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47354 * 89.99568 * 13 11 9 15 15 H 1.48497 * 109.47435 * 209.99969 * 13 11 9 16 16 H 1.48502 * 109.47301 * 329.99930 * 13 11 9 17 17 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 18 18 H 1.09004 * 109.46566 * 90.02465 * 1 2 3 19 19 H 1.09003 * 109.46769 * 210.02116 * 1 2 3 20 20 H 1.09001 * 109.47149 * 330.02647 * 1 2 3 21 21 H 1.09010 * 109.46874 * 90.03209 * 5 4 3 22 22 H 1.09001 * 109.47525 * 210.02227 * 5 4 3 23 23 H 1.08999 * 109.47609 * 330.02940 * 5 4 3 24 24 H 1.08993 * 109.46842 * 210.00401 * 7 6 4 25 25 H 1.08999 * 109.47191 * 330.00622 * 7 6 4 26 26 H 1.09002 * 109.47180 * 299.99997 * 8 7 6 27 27 H 1.08999 * 109.47168 * 60.00243 * 8 7 6 28 28 H 0.97002 * 120.00106 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0002 6 6 3.5698 -0.6757 0.0015 7 6 4.7938 -1.5549 0.0018 8 6 5.2081 -1.8514 1.4445 9 6 6.4317 -2.7312 1.4450 10 1 6.8697 -3.0475 0.5099 11 6 6.9914 -3.1331 2.6393 12 7 6.4571 -2.7491 3.7780 13 14 8.5076 -4.2241 2.6398 14 1 9.7272 -3.3768 2.6391 15 1 8.5007 -5.0807 3.8528 16 1 8.5005 -5.0822 1.4279 17 8 2.2873 -1.0890 0.0005 18 1 -0.3632 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5134 21 1 5.0476 1.7912 1.0279 22 1 5.5822 1.0793 -0.5134 23 1 4.5129 2.5024 -0.5138 24 1 4.5695 -2.4899 -0.5113 25 1 5.6080 -1.0444 -0.5124 26 1 5.4323 -0.9163 1.9577 27 1 4.3939 -2.3619 1.9588 28 1 6.8511 -3.0315 4.6182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823295.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -5.225406 kcal Electronic energy + Delta-G solvation = -11884.408248 eV Core-core repulsion = 9708.310645 eV Total energy + Delta-G solvation = -2176.097602 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.84121 -34.77839 -34.34234 -32.57534 -30.75016 -28.88632 -26.66655 -24.02589 -21.35378 -21.24719 -19.84587 -16.67315 -16.18361 -15.82004 -14.51151 -14.29859 -13.64966 -13.13774 -12.99046 -12.76300 -12.55036 -12.32663 -12.19148 -11.68587 -11.22749 -10.98820 -10.70808 -10.45213 -10.23912 -9.94554 -9.73764 -9.22091 -8.41835 -7.89099 -6.06026 -4.10430 1.96895 3.08395 3.16428 3.29069 3.35563 3.38688 4.36626 4.42136 5.22158 5.29827 5.34102 5.43318 5.49100 5.66438 5.82619 6.00227 6.14612 6.25426 6.34907 6.45600 6.61991 6.78116 6.88572 7.57569 7.66451 7.91242 8.20528 8.29019 8.95673 9.54144 11.05105 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.059060 B = 0.007886 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.980794 B = 3549.808998 C = 3731.079750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.158 3.842 3 N -0.481 5.481 4 C -0.038 4.038 5 C -0.063 4.063 6 C -0.010 4.010 7 C -0.034 4.034 8 C 0.028 3.972 9 C -0.525 4.525 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.202 6.202 18 H 0.085 0.915 19 H 0.084 0.916 20 H 0.094 0.906 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 4.715 -7.112 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 N -0.212 5.212 4 C -0.157 4.157 5 C -0.121 4.121 6 C -0.063 4.063 7 C -0.072 4.072 8 C -0.009 4.009 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 O -0.089 6.089 18 H 0.104 0.896 19 H 0.103 0.897 20 H 0.113 0.887 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.531 5.263 -6.918 11.501 hybrid contribution 1.011 -1.276 0.207 1.641 sum -6.520 3.987 -6.711 10.170 Atomic orbital electron populations 1.20104 0.81994 1.04602 1.03923 1.25981 0.96221 0.79217 1.03480 1.70201 1.01956 1.30531 1.18520 1.21379 0.92978 0.92432 1.08933 1.20027 0.92016 0.97178 1.02853 1.23998 0.83587 0.95413 1.03328 1.20520 0.87365 0.96259 1.03019 1.19117 0.96523 0.97295 0.87948 1.21155 1.11660 1.30930 0.92584 0.92309 1.25019 0.97430 0.96281 0.95551 1.69974 1.40465 1.45328 0.97355 0.86542 0.83067 0.80504 0.77591 1.20549 1.21179 1.19787 1.84383 1.17069 1.37419 1.69995 0.89637 0.89724 0.88690 0.90858 0.90703 0.91561 0.91165 0.89559 0.95942 0.96299 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.16 15 2 C 0.16 2.73 8.34 -12.94 -0.11 2.62 15 3 N -0.48 -9.20 11.30 -7.36 -0.08 -9.28 15 4 C -0.04 -0.74 7.11 -82.81 -0.59 -1.33 15 5 C -0.06 -1.03 10.22 36.00 0.37 -0.67 15 6 C -0.01 -0.21 6.64 -35.69 -0.24 -0.45 15 7 C -0.03 -0.72 5.49 -27.88 -0.15 -0.87 15 8 C 0.03 0.74 4.95 -27.88 -0.14 0.60 15 9 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 15 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -26.76 13.29 55.43 0.74 -26.03 15 13 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 17 O -0.20 -4.01 10.77 5.38 0.06 -3.96 15 18 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.07 1.20 8.14 -51.92 -0.42 0.78 15 22 H 0.07 1.12 7.17 -51.93 -0.37 0.75 15 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 25 H 0.09 1.66 7.17 -51.93 -0.37 1.29 15 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 249.56 15.07 3.76 3.76 Total: -1.00 -32.06 249.56 -5.11 -37.17 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -3.67 Total: -4.39 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.89 Total: -13.59 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.65 Total: -35.31 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.06 Total: -3.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.06 -5.11 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823295.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.943 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds