Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30599 * 125.57108 * 2 1 4 4 C 1.34343 * 109.34227 * 180.02562 * 3 2 1 5 5 N 1.40448 * 126.04123 * 179.97438 * 4 3 2 6 6 C 1.35194 * 107.91688 * 359.76610 * 4 3 2 7 7 N 1.34925 * 125.56985 * 180.02562 * 2 1 3 8 8 C 1.46498 * 126.39792 * 359.95160 * 7 2 1 9 9 C 1.53001 * 109.47428 * 84.99689 * 8 7 2 10 10 C 1.50697 * 109.46995 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 H 1.08994 * 109.47200 * 269.98265 * 1 2 3 19 19 H 1.09009 * 109.46905 * 29.98343 * 1 2 3 20 20 H 1.09000 * 109.47128 * 149.97855 * 1 2 3 21 21 H 0.97000 * 119.99388 * 0.02562 * 5 4 3 22 22 H 0.96997 * 119.99972 * 180.02562 * 5 4 3 23 23 H 1.07992 * 126.66595 * 180.25623 * 6 4 3 24 24 H 1.08998 * 109.47182 * 324.99535 * 8 7 2 25 25 H 1.09006 * 109.47506 * 204.99827 * 8 7 2 26 26 H 1.08998 * 109.47065 * 59.99774 * 9 8 7 27 27 H 1.09001 * 109.46892 * 300.00038 * 9 8 7 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2667 1.0623 0.0000 4 6 3.5566 0.6868 -0.0006 5 7 4.6674 1.5463 -0.0013 6 6 3.5964 -0.6645 0.0043 7 7 2.2919 -1.0975 -0.0005 8 6 1.8384 -2.4905 -0.0001 9 6 1.5599 -2.9367 -1.4369 10 6 1.0928 -4.3694 -1.4363 11 1 1.0078 -4.9094 -0.5050 12 6 0.7789 -4.9926 -2.6256 13 7 0.8819 -4.3349 -3.7598 14 14 0.2073 -6.7710 -2.6256 15 1 -1.2716 -6.8156 -2.4989 16 1 0.6151 -7.4219 -3.8966 17 1 0.8241 -7.4892 -1.4816 18 1 -0.3633 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5136 20 1 -0.3633 -0.8898 -0.5142 21 1 4.5368 2.5075 -0.0010 22 1 5.5650 1.1787 -0.0020 23 1 4.4813 -1.2836 0.0091 24 1 0.9259 -2.5754 0.5900 25 1 2.6118 -3.1244 0.4337 26 1 2.4723 -2.8518 -2.0270 27 1 0.7864 -2.3029 -1.8706 28 1 0.6607 -4.7733 -4.5964 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826587.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = 26.905499 kcal Electronic energy + Delta-G solvation = -11919.880132 eV Core-core repulsion = 9777.468582 eV Total energy + Delta-G solvation = -2142.411551 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.82651 -36.66414 -35.12411 -33.88523 -31.92438 -30.76743 -27.47497 -26.30086 -23.42160 -21.82452 -20.75824 -18.75254 -17.64993 -16.84644 -16.72020 -16.20172 -16.10462 -14.94810 -14.58219 -14.26145 -13.95588 -13.71879 -13.45986 -13.07011 -12.87985 -12.66817 -12.13594 -12.03884 -11.43259 -11.17000 -10.90076 -10.60532 -10.06088 -8.25517 -8.15847 -6.37634 1.24652 1.43315 1.43936 1.55058 2.06071 2.35623 2.41965 2.99438 3.10827 3.87680 3.99875 4.19074 4.47196 4.55075 4.69987 4.77025 4.83675 5.01366 5.30029 5.38805 5.55378 5.66279 5.73899 6.05715 6.39067 6.78343 6.80728 6.87450 7.33416 7.55880 8.88006 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.060636 B = 0.007945 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.658530 B = 3523.475280 C = 3685.276404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.213 3.787 3 N -0.559 5.559 4 C 0.258 3.742 5 N -0.850 5.850 6 C -0.154 4.154 7 N -0.443 5.443 8 C 0.122 3.878 9 C 0.023 3.977 10 C -0.542 4.542 11 H 0.075 0.925 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.970 3.030 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.259 1.259 18 H 0.100 0.900 19 H 0.093 0.907 20 H 0.073 0.927 21 H 0.402 0.598 22 H 0.413 0.587 23 H 0.179 0.821 24 H 0.099 0.901 25 H 0.092 0.908 26 H -0.014 1.014 27 H -0.002 1.002 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 5.277 8.195 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.050 4.050 3 N -0.288 5.288 4 C 0.032 3.968 5 N -0.402 5.402 6 C -0.289 4.289 7 N -0.127 5.127 8 C 0.001 3.999 9 C -0.015 4.015 10 C -0.580 4.580 11 H 0.093 0.907 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.183 1.183 18 H 0.119 0.881 19 H 0.112 0.888 20 H 0.091 0.909 21 H 0.231 0.769 22 H 0.244 0.756 23 H 0.196 0.804 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.005 0.995 27 H 0.016 0.984 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.185 5.815 8.027 10.150 hybrid contribution 0.555 -1.353 -0.604 1.582 sum 2.740 4.462 7.422 9.083 Atomic orbital electron populations 1.20291 0.83299 1.04276 1.04573 1.23522 0.96724 0.80922 1.03815 1.69830 1.01215 1.29536 1.28186 1.17854 0.87876 0.88415 1.02687 1.41141 1.03265 1.06836 1.88997 1.22006 0.88156 0.94757 1.23969 1.45458 1.06009 1.08084 1.53142 1.22022 1.01295 0.77001 0.99628 1.19227 0.95179 0.95973 0.91072 1.21483 1.45223 0.97468 0.93835 0.90730 1.25984 0.95377 1.03081 0.95059 1.70125 1.49367 1.39127 0.98643 0.85374 0.78802 0.78682 0.77759 1.19594 1.21300 1.18264 0.88109 0.88824 0.90856 0.76884 0.75584 0.80406 0.88261 0.88967 0.99536 0.98362 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.03 71.24 0.71 -1.27 15 2 C 0.21 8.06 7.90 138.14 1.09 9.15 15 3 N -0.56 -21.85 11.26 -184.92 -2.08 -23.93 15 4 C 0.26 9.28 8.31 131.06 1.09 10.37 15 5 N -0.85 -22.42 9.18 -55.79 -0.51 -22.94 15 6 C -0.15 -5.64 11.63 83.11 0.97 -4.68 15 7 N -0.44 -17.17 2.76 -513.31 -1.42 -18.59 15 8 C 0.12 4.75 5.61 86.38 0.48 5.24 15 9 C 0.02 1.18 5.30 29.85 0.16 1.34 15 10 C -0.54 -28.74 9.11 25.60 0.23 -28.50 15 11 H 0.07 3.65 7.74 -2.92 -0.02 3.63 15 12 C 0.00 0.19 5.46 84.66 0.46 0.65 15 13 N -0.93 -55.55 13.29 21.45 0.28 -55.27 15 14 Si 0.97 42.15 29.54 68.60 2.03 44.17 15 15 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 16 H -0.29 -12.47 7.11 99.48 0.71 -11.76 15 17 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 18 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 19 H 0.09 2.58 8.14 -2.38 -0.02 2.56 15 20 H 0.07 2.34 7.33 -2.39 -0.02 2.33 15 21 H 0.40 9.45 8.96 -92.71 -0.83 8.62 15 22 H 0.41 8.45 8.96 -92.71 -0.83 7.62 15 23 H 0.18 5.64 8.06 -2.91 -0.02 5.61 15 24 H 0.10 3.47 7.90 -2.39 -0.02 3.45 15 25 H 0.09 3.34 8.14 -2.38 -0.02 3.32 15 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 27 H 0.00 -0.11 7.66 -2.39 -0.02 -0.13 15 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 15 Total: -1.00 -66.85 248.16 3.01 -63.84 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.49 Total: 20.42 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.20 Total: -7.71 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -3.73 Total: -120.72 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.85 3.01 -63.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826587.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.741 kcal (2) G-P(sol) polarization free energy of solvation -66.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds