Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00038 * 2 1 4 4 H 1.48501 * 109.46901 * 270.13606 * 3 2 1 5 5 H 1.48506 * 109.46962 * 30.13040 * 3 2 1 6 6 H 1.48497 * 109.47295 * 150.13292 * 3 2 1 7 7 C 1.38810 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99924 * 340.28741 * 7 2 1 9 9 N 1.36934 * 120.00299 * 160.27770 * 7 2 1 10 10 C 1.47040 * 120.42747 * 152.57339 * 9 7 2 11 11 C 1.53988 * 108.16100 * 131.45158 * 10 9 7 12 12 H 1.09003 * 112.36619 * 182.96545 * 11 10 9 13 13 C 1.54534 * 108.19451 * 307.73208 * 11 10 9 14 14 C 1.54592 * 105.69516 * 88.10081 * 13 11 10 15 15 C 1.54541 * 105.70165 * 359.97438 * 14 13 11 16 16 H 1.08999 * 113.02190 * 147.50204 * 15 14 13 17 17 C 1.47049 * 120.42317 * 332.55691 * 9 7 2 18 18 C 1.52737 * 106.83783 * 59.13744 * 11 10 9 19 19 O 1.20762 * 128.75430 * 106.40037 * 18 11 10 20 20 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.72507 * 11.78493 * 10 9 7 22 22 H 1.08998 * 109.76445 * 251.14114 * 10 9 7 23 23 H 1.09004 * 110.18175 * 207.30261 * 13 11 10 24 24 H 1.09001 * 110.18657 * 329.14056 * 13 11 10 25 25 H 1.09007 * 110.12651 * 241.00794 * 14 13 11 26 26 H 1.08994 * 110.41157 * 119.14364 * 14 13 11 27 27 H 1.08994 * 109.72561 * 348.21203 * 17 9 7 28 28 H 1.09006 * 109.72484 * 108.88292 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4948 2.0481 -1.4001 5 1 1.4490 2.6519 0.7028 6 1 3.5491 1.4394 0.6972 7 6 2.0103 -1.2021 0.0005 8 1 1.5178 -2.1099 0.3164 9 7 3.3194 -1.2371 -0.3996 10 6 4.2305 -2.2661 0.1229 11 6 4.9777 -2.8949 -1.0678 12 1 5.6375 -3.7066 -0.7614 13 6 3.9304 -3.3467 -2.1104 14 6 3.6882 -2.1195 -3.0188 15 6 4.6040 -1.0036 -2.4671 16 1 4.9741 -0.3335 -3.2430 17 6 3.8319 -0.2462 -1.3577 18 6 5.7289 -1.7632 -1.7663 19 8 6.9129 -1.5257 -1.7611 20 1 -0.4850 0.8401 -0.0004 21 1 3.6585 -3.0332 0.6449 22 1 4.9463 -1.8113 0.8076 23 1 4.3179 -4.1807 -2.6957 24 1 3.0040 -3.6339 -1.6129 25 1 2.6442 -1.8111 -2.9621 26 1 3.9559 -2.3509 -4.0497 27 1 3.0003 0.3022 -1.8000 28 1 4.5007 0.4470 -0.8475 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = -30.393599 kcal Electronic energy + Delta-G solvation = -12942.198060 eV Core-core repulsion = 10765.009083 eV Total energy + Delta-G solvation = -2177.188977 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.59655 -38.60717 -35.53254 -33.26621 -32.57788 -29.06932 -26.13713 -25.72032 -23.23276 -21.43596 -19.91299 -18.84853 -17.61997 -16.63265 -16.36096 -16.02516 -15.56170 -15.39286 -14.45021 -14.24106 -13.87802 -13.76584 -13.45582 -13.27654 -12.59327 -12.30390 -12.22798 -12.01330 -11.77418 -11.55298 -11.16161 -10.79875 -10.18006 -9.05993 -8.17695 -5.51722 0.86610 1.27198 1.40706 1.46631 2.38328 2.96865 3.10511 3.22883 3.50429 3.85417 3.94061 4.03831 4.18686 4.49275 4.53671 4.69540 4.73570 4.78987 4.83023 4.92001 4.99776 5.15576 5.29739 5.56217 5.83191 6.11285 6.46354 6.83135 7.55420 7.94167 9.01304 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.046567 B = 0.015648 C = 0.014165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.142132 B = 1788.887419 C = 1976.276222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.025 4.025 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.310 1.310 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.155 3.845 11 C -0.157 4.157 12 H 0.124 0.876 13 C -0.094 4.094 14 C -0.097 4.097 15 C -0.166 4.166 16 H 0.112 0.888 17 C 0.132 3.868 18 C 0.377 3.623 19 O -0.479 6.479 20 H 0.262 0.738 21 H 0.084 0.916 22 H 0.028 0.972 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.563 -4.785 -5.112 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.220 4.220 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.370 4.370 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.030 3.970 11 C -0.177 4.177 12 H 0.142 0.858 13 C -0.131 4.131 14 C -0.134 4.134 15 C -0.186 4.186 16 H 0.130 0.870 17 C 0.006 3.994 18 C 0.254 3.746 19 O -0.354 6.354 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.046 0.954 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.028 -4.583 -5.079 11.327 hybrid contribution -0.128 1.233 0.331 1.284 sum 8.900 -3.349 -4.748 10.629 Atomic orbital electron populations 1.69916 1.07072 1.27147 1.55402 1.25772 0.95678 1.00239 1.00361 0.86200 0.78345 0.81462 0.77990 1.19697 1.23866 1.19730 1.18827 0.85524 0.93763 1.38890 0.91555 1.44536 1.07716 1.33373 1.47655 1.21246 0.91717 0.91379 0.92703 1.23436 0.98287 0.97996 0.98010 0.85785 1.22047 0.97974 0.97401 0.95689 1.22035 0.98958 0.93422 0.99029 1.23670 0.96316 0.99609 0.99048 0.86965 1.21757 0.96441 0.91594 0.89632 1.25805 0.87590 0.85141 0.76036 1.90329 1.18389 1.69970 1.56684 0.92867 0.89748 0.95419 0.89233 0.91380 0.92056 0.89428 0.91150 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 13.97 21.65 0.30 -56.84 15 2 C -0.03 -1.40 5.23 84.86 0.44 -0.95 15 3 Si 0.93 45.13 24.23 68.60 1.66 46.80 15 4 H -0.27 -12.30 6.55 99.48 0.65 -11.65 15 5 H -0.31 -15.39 7.11 99.48 0.71 -14.69 15 6 H -0.27 -13.05 6.65 99.48 0.66 -12.39 15 7 C -0.24 -12.68 10.04 84.03 0.84 -11.84 15 8 H 0.07 3.76 8.05 -2.91 -0.02 3.73 15 9 N -0.61 -26.79 2.02 -693.50 -1.40 -28.18 15 10 C 0.15 5.57 5.85 86.61 0.51 6.08 15 11 C -0.16 -4.64 4.03 -10.03 -0.04 -4.68 15 12 H 0.12 3.00 8.14 -2.39 -0.02 2.98 15 13 C -0.09 -2.60 6.05 31.66 0.19 -2.41 15 14 C -0.10 -2.90 6.06 31.66 0.19 -2.71 15 15 C -0.17 -5.50 4.09 -9.68 -0.04 -5.53 15 16 H 0.11 3.29 8.14 -2.39 -0.02 3.27 15 17 C 0.13 5.43 3.54 86.94 0.31 5.74 15 18 C 0.38 12.66 6.91 30.43 0.21 12.88 15 19 O -0.48 -18.16 17.99 -1.46 -0.03 -18.19 15 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 21 H 0.08 2.91 7.94 -2.38 -0.02 2.89 15 22 H 0.03 1.01 8.14 -2.39 -0.02 0.99 15 23 H 0.09 1.92 8.14 -2.38 -0.02 1.90 15 24 H 0.07 2.14 7.86 -2.39 -0.02 2.12 15 25 H 0.06 2.18 7.87 -2.38 -0.02 2.16 15 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.07 3.13 4.85 -2.39 -0.01 3.12 15 28 H 0.02 0.98 6.72 -2.38 -0.02 0.96 15 Total: -1.00 -62.23 222.63 4.20 -58.03 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.04 Total: 1.81 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 2.62 Total: -3.43 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.10 Total: -85.02 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.03 Total: -18.19 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.66 Total: 46.80 kcal Total: -62.23 4.20 -58.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.641 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds