Wall clock time and date at job start Mon Mar 30 2020 02:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47298 * 179.97438 * 4 3 2 6 6 C 1.34324 * 126.76111 * 264.69299 * 5 4 3 7 7 N 1.36643 * 109.39353 * 179.86830 * 6 5 4 8 8 H 0.96998 * 124.79247 * 180.16299 * 7 6 5 9 9 C 1.34924 * 110.41908 * 0.40747 * 7 6 5 10 10 C 1.39276 * 107.92274 * 359.75739 * 9 7 6 11 11 C 1.41342 * 127.10859 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00034 * 179.97438 * 11 10 9 13 13 C 1.39679 * 120.00112 * 359.97438 * 11 10 9 14 14 N 1.31051 * 120.00086 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99862 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46955 * 90.00036 * 15 13 11 17 17 H 1.48490 * 109.46960 * 209.99723 * 15 13 11 18 18 H 1.48503 * 109.47139 * 330.00091 * 15 13 11 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 21 21 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 22 22 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 23 23 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 24 24 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 25 25 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 26 26 H 1.08002 * 125.30190 * 359.97438 * 6 5 4 27 27 H 1.07992 * 126.03996 * 179.78150 * 9 7 6 28 28 H 0.97000 * 119.99858 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 6 4.5668 3.2546 -1.0718 7 7 5.0599 4.4628 -0.6665 8 1 5.4194 5.1409 -1.2595 9 6 4.9812 4.5771 0.6756 10 6 4.4119 3.4072 1.1727 11 6 4.1428 3.0978 2.5254 12 1 3.6950 2.1495 2.7836 13 6 4.4560 4.0183 3.5281 14 7 4.9990 5.1692 3.2148 15 14 4.0996 3.6095 5.3157 16 1 5.2788 2.9329 5.9133 17 1 3.8160 4.8612 6.0626 18 1 2.9209 2.7095 5.3922 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.6886 1.8464 -0.8900 23 1 1.6886 1.8464 0.8899 24 1 3.8567 0.6439 0.8908 25 1 3.8575 0.6436 -0.8892 26 1 4.5190 2.9113 -2.0947 27 1 5.3024 5.4259 1.2609 28 1 5.2168 5.8083 3.9112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:13 Heat of formation + Delta-G solvation = -37.170259 kcal Electronic energy + Delta-G solvation = -11992.222327 eV Core-core repulsion = 9814.739492 eV Total energy + Delta-G solvation = -2177.482835 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81120 -38.69984 -35.25520 -33.82978 -30.51922 -28.79447 -26.87678 -26.59000 -23.73105 -21.33258 -19.60932 -18.66746 -17.66200 -17.04909 -16.78143 -16.25787 -15.77677 -14.43030 -14.28347 -14.20318 -14.05144 -13.22027 -12.93056 -12.88147 -12.60337 -12.55771 -12.12512 -11.98807 -11.52549 -11.24725 -11.12771 -10.52530 -9.02315 -8.44357 -8.28278 -5.93311 1.37972 1.41306 1.53791 2.00848 2.35397 2.38284 3.00984 3.29291 3.69803 4.22812 4.40366 4.55531 4.61684 4.65895 4.76007 4.83358 4.98883 5.10806 5.22558 5.40086 5.45763 5.92131 6.09470 6.26956 6.32061 6.59089 7.01804 7.30570 7.44437 7.61055 8.71379 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.012765 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.839275 B = 2192.937502 C = 3089.890438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.081 3.919 4 C -0.014 4.014 5 C -0.254 4.254 6 C -0.019 4.019 7 N -0.563 5.563 8 H 0.409 0.591 9 C -0.135 4.135 10 C -0.027 4.027 11 C -0.458 4.458 12 H 0.055 0.945 13 C 0.010 3.990 14 N -0.868 5.868 15 Si 0.976 3.024 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.267 1.267 19 H 0.104 0.896 20 H 0.038 0.962 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.177 0.823 27 H 0.166 0.834 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -3.835 -5.659 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.004 3.996 4 C -0.052 4.052 5 C -0.264 4.264 6 C -0.151 4.151 7 N -0.161 5.161 8 H 0.245 0.755 9 C -0.263 4.263 10 C -0.032 4.032 11 C -0.492 4.492 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.501 5.501 15 Si 0.800 3.200 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.192 1.192 19 H 0.122 0.878 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.194 0.806 27 H 0.183 0.817 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.580 -3.683 -5.583 8.107 hybrid contribution -0.067 0.620 0.764 0.986 sum -4.647 -3.063 -4.819 7.362 Atomic orbital electron populations 1.22922 0.79884 1.03823 1.00476 1.87791 1.21346 1.28941 1.95541 1.22438 0.94294 0.83394 0.99432 1.19367 0.91837 0.92950 1.01076 1.20476 1.14245 0.98085 0.93610 1.21502 1.07058 0.87978 0.98521 1.41308 1.52141 1.15490 1.07147 0.75513 1.22955 1.17493 1.03734 0.82156 1.18784 0.99294 0.92803 0.92339 1.18973 1.37077 1.01761 0.91436 0.92665 1.26386 0.94295 0.94379 1.04453 1.69619 1.37735 1.07765 1.34946 0.85272 0.79017 0.78194 0.77541 1.19524 1.19718 1.19190 0.87767 0.94364 0.93039 0.92797 0.95366 0.93866 0.90686 0.80592 0.81714 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 15 2 O -0.42 -14.67 10.70 -148.98 -1.59 -16.26 15 3 C 0.08 3.11 5.92 71.98 0.43 3.54 15 4 C -0.01 -0.59 6.02 29.85 0.18 -0.41 15 5 C -0.25 -12.09 5.61 -18.47 -0.10 -12.19 15 6 C -0.02 -0.78 11.78 83.05 0.98 0.19 15 7 N -0.56 -23.89 5.91 -192.40 -1.14 -25.03 15 8 H 0.41 13.67 8.96 -92.71 -0.83 12.84 15 9 C -0.13 -7.19 10.94 84.47 0.92 -6.27 15 10 C -0.03 -1.51 6.12 -19.97 -0.12 -1.63 15 11 C -0.46 -26.89 9.34 23.38 0.22 -26.67 15 12 H 0.06 3.21 7.84 -2.91 -0.02 3.19 15 13 C 0.01 0.57 5.49 85.16 0.47 1.04 15 14 N -0.87 -48.72 10.38 21.79 0.23 -48.50 15 15 Si 0.98 42.97 29.56 68.60 2.03 45.00 15 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 19 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 20 H 0.04 0.98 8.14 -2.39 -0.02 0.96 15 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.07 2.72 8.14 -2.38 -0.02 2.70 15 26 H 0.18 5.50 8.06 -2.91 -0.02 5.47 15 27 H 0.17 9.33 5.78 -2.91 -0.02 9.31 15 28 H 0.27 14.11 8.30 -92.71 -0.77 13.34 15 Total: -1.00 -65.72 246.05 4.06 -61.67 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.32 Total: 23.64 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 4.22 Total: -40.52 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -0.91 Total: -73.53 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.59 Total: -16.26 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.72 4.06 -61.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds