Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41379 * 126.57796 * 2 1 4 4 C 1.34516 * 106.84217 * 179.83315 * 3 2 1 5 5 O 1.34301 * 108.41589 * 0.42550 * 4 3 2 6 6 C 1.34303 * 109.48092 * 359.72422 * 5 4 3 7 7 C 1.50701 * 125.79342 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46902 * 59.95463 * 7 6 5 10 10 H 1.08000 * 119.99899 * 265.99018 * 9 7 6 11 11 C 1.37872 * 119.99879 * 85.99474 * 9 7 6 12 12 N 1.31522 * 119.99967 * 5.42846 * 11 9 7 13 13 Si 1.86803 * 120.00181 * 185.42631 * 11 9 7 14 14 H 1.48499 * 109.47139 * 90.00090 * 13 11 9 15 15 H 1.48503 * 109.47018 * 210.00117 * 13 11 9 16 16 H 1.48499 * 109.46794 * 329.99731 * 13 11 9 17 17 C 1.52997 * 109.47109 * 299.95847 * 7 6 5 18 18 N 1.46901 * 109.47459 * 185.41975 * 17 7 6 19 19 H 1.09005 * 109.47430 * 269.69245 * 1 2 3 20 20 H 1.09002 * 109.47002 * 149.69691 * 1 2 3 21 21 H 1.08995 * 109.47287 * 29.68872 * 1 2 3 22 22 H 1.08004 * 126.57812 * 359.97438 * 3 2 1 23 23 H 1.08001 * 125.79009 * 180.10900 * 4 3 2 24 24 H 0.97003 * 119.99721 * 180.02562 * 12 11 9 25 25 H 1.09004 * 109.47140 * 305.42020 * 17 7 6 26 26 H 1.08998 * 109.47245 * 65.41820 * 17 7 6 27 27 H 1.00899 * 111.00338 * 174.28995 * 18 17 7 28 28 H 1.00899 * 110.99916 * 298.24879 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6811 0.0037 5 8 3.5847 -0.6615 -0.0035 6 6 2.3086 -1.0802 -0.0057 7 6 1.8522 -2.5164 -0.0129 8 1 0.7628 -2.5514 -0.0128 9 6 2.3778 -3.2166 1.2137 10 1 3.3069 -3.7652 1.1658 11 6 1.6726 -3.1570 2.3969 12 7 0.4907 -2.5809 2.4297 13 14 2.3956 -3.8944 3.9534 14 1 3.1932 -2.8637 4.6653 15 1 1.2971 -4.3660 4.8344 16 1 3.2713 -5.0398 3.5979 17 6 2.3844 -3.2144 -1.2660 18 7 1.8343 -4.5745 -1.3400 19 1 -0.3634 -0.0055 1.0277 20 1 -0.3633 -0.8873 -0.5185 21 1 -0.3633 0.8927 -0.5090 22 1 2.0365 2.1690 -0.0004 23 1 4.5060 1.2924 0.0064 24 1 -0.0053 -2.5386 3.2622 25 1 2.0840 -2.6523 -2.1504 26 1 3.4722 -3.2645 -1.2197 27 1 2.0957 -5.0238 -2.2048 28 1 2.1225 -5.1249 -0.5450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961091.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = -21.202234 kcal Electronic energy + Delta-G solvation = -12482.218333 eV Core-core repulsion = 10305.427923 eV Total energy + Delta-G solvation = -2176.790410 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.14127 -37.06183 -34.64980 -34.22569 -31.76582 -29.60700 -27.28622 -26.11202 -22.92420 -21.70913 -20.29288 -18.66414 -17.43016 -16.83081 -16.46406 -16.25472 -15.57882 -14.86143 -14.45794 -13.84370 -13.76816 -13.48857 -13.26321 -13.00527 -12.92855 -12.78418 -12.40374 -12.08612 -11.43673 -11.20801 -10.59797 -10.25997 -9.40591 -8.83433 -8.12425 -6.23591 1.21194 1.40483 1.41696 1.50384 1.98036 2.41580 2.57343 3.19993 3.95664 4.25805 4.30933 4.45314 4.59379 4.73867 4.81562 4.95584 5.00049 5.13537 5.26445 5.52328 5.57235 5.63051 5.80644 5.97004 6.22331 6.45215 6.68446 6.85819 6.90025 7.42496 8.93384 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.015715 C = 0.013268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.334018 B = 1781.347815 C = 2109.805273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.234 4.234 3 C -0.219 4.219 4 C -0.081 4.081 5 O -0.197 6.197 6 C 0.027 3.973 7 C 0.107 3.893 8 H 0.064 0.936 9 C -0.524 4.524 10 H 0.050 0.950 11 C 0.026 3.974 12 N -0.899 5.899 13 Si 0.949 3.051 14 H -0.286 1.286 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.085 3.915 18 N -0.844 5.844 19 H 0.045 0.955 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.163 0.837 23 H 0.233 0.767 24 H 0.262 0.738 25 H 0.054 0.946 26 H 0.011 0.989 27 H 0.342 0.658 28 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 3.438 -4.568 6.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.235 4.235 3 C -0.238 4.238 4 C -0.147 4.147 5 O -0.094 6.094 6 C -0.024 4.024 7 C 0.089 3.911 8 H 0.082 0.918 9 C -0.562 4.562 10 H 0.068 0.932 11 C -0.175 4.175 12 N -0.536 5.536 13 Si 0.775 3.225 14 H -0.212 1.212 15 H -0.207 1.207 16 H -0.189 1.189 17 C -0.046 4.046 18 N -0.375 5.375 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.180 0.820 23 H 0.249 0.751 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.154 0.846 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.866 3.633 -4.427 6.404 hybrid contribution 1.118 -0.332 1.092 1.598 sum 3.985 3.301 -3.335 6.156 Atomic orbital electron populations 1.19844 0.89358 1.01013 1.00761 1.20476 0.97782 0.92740 1.12532 1.21900 0.92897 0.99793 1.09184 1.24558 1.00613 0.80861 1.08665 1.83973 1.30158 1.23440 1.71827 1.23678 0.79865 0.98588 1.00308 1.17551 0.97356 0.82889 0.93353 0.91846 1.21099 1.07284 1.32555 0.95224 0.93172 1.25668 0.94825 0.95387 1.01652 1.70047 1.12204 1.44068 1.27284 0.85694 0.78186 0.78699 0.79872 1.21190 1.20698 1.18850 1.21593 0.95057 0.90685 0.97296 1.58519 1.67586 1.03794 1.07590 0.93593 0.93467 0.90855 0.81952 0.75123 0.92937 0.92746 0.97120 0.84553 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.21 10.02 71.24 0.71 -1.50 15 2 C -0.23 -10.59 6.16 -19.94 -0.12 -10.72 15 3 C -0.22 -8.30 10.87 22.19 0.24 -8.06 15 4 C -0.08 -2.96 12.09 66.97 0.81 -2.15 15 5 O -0.20 -9.06 10.65 -2.46 -0.03 -9.08 15 6 C 0.03 1.32 5.81 24.83 0.14 1.47 15 7 C 0.11 5.44 2.35 -12.29 -0.03 5.41 15 8 H 0.06 3.58 6.14 -2.39 -0.01 3.56 15 9 C -0.52 -28.42 7.44 25.60 0.19 -28.23 15 10 H 0.05 2.70 7.82 -2.91 -0.02 2.68 15 11 C 0.03 1.44 5.45 84.65 0.46 1.90 15 12 N -0.90 -51.30 12.91 21.45 0.28 -51.02 15 13 Si 0.95 43.65 29.54 68.60 2.03 45.68 15 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 15 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 15 17 C 0.08 3.64 6.19 86.30 0.53 4.17 15 18 N -0.84 -32.48 9.57 -186.72 -1.79 -34.27 15 19 H 0.05 2.06 8.14 -2.38 -0.02 2.04 15 20 H 0.05 2.04 7.15 -2.39 -0.02 2.03 15 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.16 4.95 8.06 -2.91 -0.02 4.92 15 23 H 0.23 5.83 8.06 -2.91 -0.02 5.80 15 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 15 25 H 0.05 2.20 8.14 -2.38 -0.02 2.18 15 26 H 0.01 0.45 8.14 -2.39 -0.02 0.44 15 27 H 0.34 10.45 9.08 -89.69 -0.81 9.64 15 28 H 0.35 13.75 8.24 -89.69 -0.74 13.01 15 Total: -1.00 -62.53 245.80 3.05 -59.48 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.38 Total: 26.91 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 2.94 Total: -37.69 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.51 Total: -85.29 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.03 Total: -9.08 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.53 3.05 -59.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961091.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.273 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds