Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34669 * 126.59505 * 2 1 4 4 N 1.34128 * 108.02336 * 180.02562 * 3 2 1 5 5 C 1.30498 * 109.25660 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.65089 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46801 * 195.03722 * 6 5 4 8 8 N 1.46892 * 109.47076 * 315.04180 * 6 5 4 9 9 C 1.50699 * 109.47083 * 75.04370 * 6 5 4 10 10 H 1.07997 * 120.00081 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99888 * 180.02562 * 9 6 5 12 12 N 1.31510 * 119.99880 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47407 * 59.99739 * 13 11 9 15 15 H 1.48504 * 109.46867 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47019 * 299.99569 * 13 11 9 17 17 N 1.35044 * 108.69841 * 0.02562 * 5 4 3 18 18 C 1.46503 * 126.39660 * 179.74090 * 17 5 4 19 19 H 1.09003 * 109.46904 * 269.95941 * 1 2 3 20 20 H 1.09005 * 109.46776 * 29.95345 * 1 2 3 21 21 H 1.08998 * 109.47110 * 149.95502 * 1 2 3 22 22 H 1.07998 * 125.98937 * 0.07309 * 3 2 1 23 23 H 1.00895 * 111.00344 * 60.00256 * 8 6 5 24 24 H 1.00906 * 110.99961 * 183.95118 * 8 6 5 25 25 H 0.97001 * 119.99453 * 179.97438 * 12 11 9 26 26 H 1.09006 * 109.47414 * 89.99470 * 18 17 5 27 27 H 1.09001 * 109.47268 * 209.99501 * 18 17 5 28 28 H 1.09001 * 109.46803 * 329.99456 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 -0.0006 5 6 3.5968 -0.6509 -0.0015 6 6 4.8318 -1.5145 -0.0029 7 1 4.5605 -2.5359 -0.2700 8 7 5.7940 -0.9913 -0.9817 9 6 5.4545 -1.5028 1.3694 10 1 5.0016 -0.9272 2.1630 11 6 6.6031 -2.2262 1.6114 12 7 7.1550 -2.9267 0.6448 13 14 7.3754 -2.2111 3.3122 14 1 6.4030 -2.7400 4.3021 15 1 8.5930 -3.0612 3.3106 16 1 7.7445 -0.8194 3.6759 17 7 2.3229 -1.0991 -0.0021 18 6 1.8943 -2.4999 -0.0085 19 1 -0.3633 -0.0007 1.0277 20 1 -0.3633 0.8905 -0.5131 21 1 -0.3633 -0.8896 -0.5145 22 1 1.9866 2.1117 0.0011 23 1 6.0614 -0.0450 -0.7559 24 1 6.6038 -1.5897 -1.0482 25 1 7.9632 -3.4352 0.8150 26 1 1.7893 -2.8526 1.0176 27 1 0.9362 -2.5844 -0.5215 28 1 2.6383 -3.1052 -0.5264 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963313.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = 50.155254 kcal Electronic energy + Delta-G solvation = -12315.833999 eV Core-core repulsion = 10174.430634 eV Total energy + Delta-G solvation = -2141.403366 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.27156 -34.67574 -33.31196 -31.71446 -30.55069 -26.55907 -26.33707 -25.20743 -22.46127 -19.71922 -18.68897 -16.55556 -16.16425 -15.05321 -14.69770 -14.11534 -13.25653 -13.15031 -12.90309 -12.81524 -12.24970 -12.05025 -11.92968 -11.81997 -11.17395 -10.92073 -10.82983 -10.05326 -9.90074 -8.99478 -8.77502 -8.66765 -7.44764 -7.12588 -6.10901 -4.26926 2.80715 3.25176 3.29610 3.33979 3.52916 4.07237 4.35893 5.11617 5.21269 5.29014 5.43726 5.56788 5.65482 5.78508 5.86003 5.99722 6.15101 6.39307 6.69137 7.05196 7.33955 7.63808 7.74719 7.93760 8.14824 8.64834 8.91936 9.11887 9.18196 9.45231 10.86463 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049142 B = 0.010584 C = 0.010426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.638651 B = 2644.822946 C = 2685.060154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.070 4.070 3 C -0.032 4.032 4 N -0.496 5.496 5 C 0.272 3.728 6 C 0.290 3.710 7 H 0.048 0.952 8 N -0.845 5.845 9 C -0.538 4.538 10 H 0.056 0.944 11 C 0.067 3.933 12 N -0.896 5.896 13 Si 0.902 3.098 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.462 5.462 18 C 0.077 3.923 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.156 0.844 23 H 0.327 0.673 24 H 0.357 0.643 25 H 0.267 0.733 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 0.650 -0.721 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.184 4.184 3 C -0.181 4.181 4 N -0.213 5.213 5 C 0.008 3.992 6 C 0.178 3.822 7 H 0.065 0.935 8 N -0.376 5.376 9 C -0.579 4.579 10 H 0.075 0.925 11 C -0.136 4.136 12 N -0.535 5.535 13 Si 0.730 3.270 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.145 5.145 18 C -0.066 4.066 19 H 0.080 0.920 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.173 0.827 23 H 0.137 0.863 24 H 0.173 0.827 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.608 0.764 -1.318 9.728 hybrid contribution 0.289 -0.496 1.854 1.941 sum -9.319 0.268 0.536 9.339 Atomic orbital electron populations 1.20036 0.88341 1.02195 1.01618 1.20959 0.93793 0.87578 1.16064 1.21959 0.89445 0.97629 1.09066 1.70224 1.20840 1.08899 1.21364 1.24214 0.85609 0.90743 0.98631 1.17341 0.83401 0.90161 0.91273 0.93463 1.59227 1.20411 1.07029 1.50971 1.21687 1.10149 1.29592 0.96486 0.92540 1.24979 0.96617 0.94361 0.97602 1.69728 1.20967 1.30686 1.32095 0.86484 0.78451 0.78217 0.83873 1.20260 1.21109 1.20034 1.45172 1.07108 1.06302 1.55926 1.21889 1.01217 0.80363 1.03118 0.91980 0.90862 0.92581 0.82662 0.86307 0.82669 0.92283 0.91047 0.90834 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.18 36.00 0.37 -0.45 15 2 C -0.07 -1.29 6.95 -81.60 -0.57 -1.86 15 3 C -0.03 -0.66 11.79 -17.81 -0.21 -0.87 15 4 N -0.50 -12.08 11.08 -10.82 -0.12 -12.20 15 5 C 0.27 6.57 6.68 -155.42 -1.04 5.53 15 6 C 0.29 7.52 3.08 -70.02 -0.22 7.31 15 7 H 0.05 1.26 6.74 -51.93 -0.35 0.91 15 8 N -0.85 -21.53 9.18 -6.65 -0.06 -21.59 15 9 C -0.54 -14.96 8.71 -34.44 -0.30 -15.26 15 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 11 C 0.07 1.81 5.38 -17.82 -0.10 1.72 15 12 N -0.90 -24.50 11.54 55.43 0.64 -23.86 15 13 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 17 N -0.46 -9.35 3.15 -116.67 -0.37 -9.71 15 18 C 0.08 1.22 10.76 59.85 0.64 1.86 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.06 0.63 7.22 -51.93 -0.37 0.26 15 22 H 0.16 2.64 8.06 -52.49 -0.42 2.21 15 23 H 0.33 8.42 8.84 -39.29 -0.35 8.08 15 24 H 0.36 9.34 7.08 -39.29 -0.28 9.07 15 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.07 0.90 7.19 -51.93 -0.37 0.53 15 28 H 0.09 1.44 6.92 -51.93 -0.36 1.08 15 LS Contribution 241.84 15.07 3.64 3.64 Total: -1.00 -30.58 241.84 -6.02 -36.60 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -3.31 Total: 12.93 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: 0.09 Total: -67.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.58 -6.02 -36.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963313.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.753 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds