Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35317 * 126.03837 * 2 1 4 4 N 1.34949 * 107.74700 * 180.25115 * 3 2 1 5 5 H 0.97001 * 126.03348 * 179.78095 * 4 3 2 6 6 N 1.40084 * 107.92488 * 359.64126 * 4 3 2 7 7 C 1.30843 * 108.20199 * 0.36467 * 6 4 3 8 8 C 1.50698 * 125.89499 * 179.74121 * 7 6 4 9 9 H 1.09000 * 109.47213 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47115 * 60.04231 * 8 7 6 11 11 H 1.07999 * 120.00517 * 274.89024 * 10 8 7 12 12 C 1.37880 * 120.00098 * 94.89326 * 10 8 7 13 13 N 1.31517 * 119.99654 * 5.39637 * 12 10 8 14 14 Si 1.86798 * 120.00274 * 185.39161 * 12 10 8 15 15 H 1.48501 * 109.47141 * 60.00194 * 14 12 10 16 16 H 1.48498 * 109.47314 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47380 * 300.00080 * 14 12 10 18 18 C 1.53000 * 109.47430 * 300.04420 * 8 7 6 19 19 N 1.46900 * 109.47433 * 185.31453 * 18 8 7 20 20 H 1.08996 * 109.47048 * 89.97012 * 1 2 3 21 21 H 1.09001 * 109.46968 * 209.96736 * 1 2 3 22 22 H 1.08998 * 109.47072 * 329.97012 * 1 2 3 23 23 H 1.08005 * 126.12949 * 359.97438 * 3 2 1 24 24 H 0.96999 * 119.99615 * 180.02562 * 13 12 10 25 25 H 1.09003 * 109.47063 * 305.31220 * 18 8 7 26 26 H 1.09002 * 109.47483 * 65.31211 * 18 8 7 27 27 H 1.00893 * 111.00068 * 56.04491 * 19 18 8 28 28 H 1.00901 * 110.99747 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5844 0.6707 -0.0056 5 1 4.3723 1.2364 -0.0100 6 7 3.5755 -0.7301 -0.0009 7 6 2.3299 -1.1309 -0.0006 8 6 1.8628 -2.5637 -0.0016 9 1 0.7731 -2.5906 -0.0015 10 6 2.3822 -3.2622 1.2284 11 1 3.3717 -3.6951 1.2264 12 6 1.5943 -3.3489 2.3566 13 7 0.3525 -2.9169 2.3261 14 14 2.2906 -4.0799 3.9283 15 1 3.4619 -3.2808 4.3694 16 1 1.2501 -4.0583 4.9876 17 1 2.7134 -5.4811 3.6776 18 6 2.3906 -3.2714 -1.2512 19 7 1.8323 -4.6285 -1.3180 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3633 -0.8903 0.5133 22 1 -0.3633 0.8897 0.5143 23 1 1.9723 2.1224 -0.0004 24 1 -0.2017 -2.9775 3.1199 25 1 2.0934 -2.7121 -2.1383 26 1 3.4782 -3.3278 -1.2048 27 1 0.8239 -4.6061 -1.2970 28 1 2.1659 -5.1168 -2.1356 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974771.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = 63.044514 kcal Electronic energy + Delta-G solvation = -12390.165117 eV Core-core repulsion = 10249.320672 eV Total energy + Delta-G solvation = -2140.844445 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19835 -35.10112 -32.19580 -31.56203 -30.47250 -27.61125 -25.47064 -24.10324 -21.61890 -19.53078 -18.25733 -16.89206 -16.26657 -14.72766 -14.38376 -13.86953 -13.43533 -13.24656 -12.35889 -12.12350 -11.96038 -11.89345 -11.49352 -10.92932 -10.65881 -10.59594 -10.38199 -9.67862 -9.53288 -8.86716 -8.32667 -8.20009 -7.59127 -7.45329 -5.88905 -3.84584 2.80177 3.44327 3.46689 3.52140 3.80363 3.91603 4.59289 5.35962 5.56986 5.68324 5.91428 6.19392 6.32844 6.39362 6.49352 6.63479 6.74638 6.95225 7.15734 7.24764 7.69405 7.80457 8.06343 8.14905 8.20758 8.41021 8.51013 8.86122 9.18537 9.74754 11.21009 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.015016 C = 0.012922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.324757 B = 1864.223718 C = 2166.249598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.229 4.229 3 C 0.024 3.976 4 N -0.504 5.504 5 H 0.425 0.575 6 N -0.305 5.305 7 C 0.133 3.867 8 C 0.102 3.898 9 H 0.078 0.922 10 C -0.469 4.469 11 H 0.055 0.945 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.276 1.276 18 C 0.083 3.917 19 N -0.831 5.831 20 H 0.044 0.956 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.158 0.842 24 H 0.259 0.741 25 H -0.008 1.008 26 H 0.058 0.942 27 H 0.335 0.665 28 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 5.731 -5.500 7.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.240 4.240 3 C -0.122 4.122 4 N -0.211 5.211 5 H 0.267 0.733 6 N -0.127 5.127 7 C -0.036 4.036 8 C 0.081 3.919 9 H 0.096 0.904 10 C -0.508 4.508 11 H 0.073 0.927 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.048 4.048 19 N -0.358 5.358 20 H 0.063 0.937 21 H 0.107 0.893 22 H 0.063 0.937 23 H 0.175 0.825 24 H 0.068 0.932 25 H 0.010 0.990 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.815 5.286 -4.685 7.293 hybrid contribution -0.452 0.836 0.201 0.971 sum 1.363 6.122 -4.483 7.709 Atomic orbital electron populations 1.20072 0.90156 1.02899 1.00041 1.20153 0.97030 0.91820 1.15042 1.22084 0.85548 0.98999 1.05584 1.46240 1.06052 1.06639 1.62126 0.73346 1.77309 1.21678 0.86810 1.26916 1.23401 0.88861 0.98366 0.92939 1.17583 0.98495 0.82780 0.93037 0.90357 1.20721 1.01026 1.33346 0.95711 0.92655 1.24906 0.94742 0.95280 0.98731 1.69857 1.06433 1.48002 1.28970 0.86678 0.78499 0.79744 0.83152 1.20710 1.21599 1.20188 1.21788 0.99093 0.87865 0.96085 1.58483 1.13133 1.18482 1.45711 0.93731 0.89321 0.93721 0.82462 0.93160 0.98951 0.92353 0.85276 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.03 36.00 0.36 -1.05 15 2 C -0.23 -4.89 6.10 -105.06 -0.64 -5.53 15 3 C 0.02 0.43 11.90 -17.22 -0.20 0.22 15 4 N -0.50 -9.35 7.36 30.45 0.22 -9.12 15 5 H 0.43 6.04 8.96 -182.61 -1.64 4.40 15 6 N -0.31 -7.16 12.70 33.67 0.43 -6.73 15 7 C 0.13 3.22 5.71 -82.41 -0.47 2.75 15 8 C 0.10 2.57 2.45 -92.93 -0.23 2.34 15 9 H 0.08 2.09 6.00 -51.93 -0.31 1.77 15 10 C -0.47 -13.22 8.03 -34.44 -0.28 -13.49 15 11 H 0.06 1.62 7.82 -52.49 -0.41 1.21 15 12 C 0.06 1.82 5.45 -17.82 -0.10 1.72 15 13 N -0.89 -25.42 12.77 55.43 0.71 -24.71 15 14 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 15 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 18 C 0.08 1.84 6.14 -3.82 -0.02 1.82 15 19 N -0.83 -16.73 9.35 -10.37 -0.10 -16.83 15 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.09 1.97 7.23 -51.93 -0.38 1.59 15 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.16 2.11 8.06 -52.48 -0.42 1.69 15 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 25 H -0.01 -0.16 8.14 -51.93 -0.42 -0.58 15 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 15 27 H 0.34 6.49 8.99 -39.30 -0.35 6.14 15 28 H 0.32 5.31 9.08 -39.29 -0.36 4.95 15 LS Contribution 245.87 15.07 3.71 3.71 Total: -1.00 -31.69 245.87 -6.33 -38.02 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.69 Total: 9.54 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.58 Total: -11.23 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 1.26 Total: -57.39 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.69 -6.33 -38.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974771.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.062 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds