Wall clock time and date at job start Mon Mar 30 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35317 * 126.12415 * 2 1 4 4 C 1.50699 * 126.04035 * 0.02772 * 3 2 1 5 5 H 1.09000 * 109.46912 * 324.71233 * 4 3 2 6 6 N 1.46899 * 109.47054 * 204.71291 * 4 3 2 7 7 C 1.50698 * 109.47178 * 84.71454 * 4 3 2 8 8 H 1.07995 * 120.00332 * 24.50048 * 7 4 3 9 9 C 1.37875 * 119.99730 * 204.50310 * 7 4 3 10 10 N 1.31517 * 120.00255 * 353.35189 * 9 7 4 11 11 Si 1.86805 * 119.99939 * 173.35120 * 9 7 4 12 12 H 1.48502 * 109.47193 * 270.00123 * 11 9 7 13 13 H 1.48494 * 109.46856 * 30.00176 * 11 9 7 14 14 H 1.48495 * 109.46883 * 150.00169 * 11 9 7 15 15 C 1.39870 * 107.91816 * 179.76172 * 3 2 1 16 16 N 1.30839 * 108.20569 * 0.24256 * 15 3 2 17 17 N 1.34952 * 126.13108 * 180.18301 * 2 1 3 18 18 C 1.46498 * 126.03432 * 359.97438 * 17 2 1 19 19 H 1.09001 * 109.47477 * 90.00262 * 1 2 3 20 20 H 1.09005 * 109.47076 * 209.99682 * 1 2 3 21 21 H 1.09000 * 109.47508 * 329.99683 * 1 2 3 22 22 H 1.00902 * 111.00548 * 177.69717 * 6 4 3 23 23 H 1.00898 * 111.00445 * 301.65638 * 6 4 3 24 24 H 0.97000 * 119.99977 * 358.00183 * 10 9 7 25 25 H 1.08006 * 125.89940 * 180.26175 * 15 3 2 26 26 H 1.09004 * 109.47314 * 270.31012 * 18 17 2 27 27 H 1.09002 * 109.47228 * 30.31457 * 18 17 2 28 28 H 1.08996 * 109.46979 * 150.31639 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8431 2.5276 0.0006 5 1 0.9331 2.6167 -0.5927 6 7 2.8906 3.3792 -0.5786 7 6 1.5652 2.9653 1.4156 8 1 2.0543 2.4685 2.2404 9 6 0.6866 4.0000 1.6571 10 7 0.1916 4.6903 0.6530 11 14 0.1989 4.4212 3.4105 12 1 -1.0051 3.6397 3.7908 13 1 1.3167 4.0866 4.3290 14 1 -0.1024 5.8722 3.5054 15 6 3.6334 0.6560 0.0055 16 7 3.6334 -0.6524 0.0035 17 7 2.3027 -1.0900 -0.0035 18 6 1.8540 -2.4845 -0.0074 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 2.5904 4.3415 -0.6240 23 1 3.7531 3.2935 -0.0620 24 1 0.4670 4.4906 -0.2553 25 1 4.5083 1.2893 0.0109 26 1 1.7378 -2.8318 1.0193 27 1 0.8980 -2.5572 -0.5260 28 1 2.5924 -3.1023 -0.5184 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980222.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:12 Heat of formation + Delta-G solvation = 42.138832 kcal Electronic energy + Delta-G solvation = -12343.120387 eV Core-core repulsion = 10201.369403 eV Total energy + Delta-G solvation = -2141.750984 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.09651 -37.00871 -34.29982 -33.38304 -32.20690 -28.30964 -27.44310 -26.85191 -24.02950 -21.36974 -20.40412 -18.88775 -17.31015 -16.64717 -16.35544 -15.68286 -15.11608 -14.77008 -14.42457 -14.05517 -13.93119 -13.72770 -13.22563 -13.19098 -12.83073 -12.58016 -12.18179 -11.97008 -11.43087 -11.25375 -10.66920 -10.04220 -9.40769 -8.98211 -8.43099 -6.33258 0.98067 1.53103 1.59075 1.77225 1.78530 2.00414 2.57382 3.18244 3.72711 3.92367 4.23426 4.36313 4.42460 4.47625 4.62846 4.69789 4.77524 4.88924 5.07503 5.19774 5.54630 5.85551 5.98380 6.15826 6.28792 6.62079 6.65476 6.86909 6.91960 7.45467 8.77453 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.011685 C = 0.010628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.897055 B = 2395.740639 C = 2633.942221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.064 3.936 3 C -0.215 4.215 4 C 0.270 3.730 5 H 0.017 0.983 6 N -0.844 5.844 7 C -0.621 4.621 8 H 0.029 0.971 9 C -0.016 4.016 10 N -0.929 5.929 11 Si 1.110 2.890 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.044 3.956 16 N -0.332 5.332 17 N -0.381 5.381 18 C 0.095 3.905 19 H 0.085 0.915 20 H 0.094 0.906 21 H 0.064 0.936 22 H 0.325 0.675 23 H 0.326 0.674 24 H 0.262 0.738 25 H 0.183 0.817 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -10.641 -0.026 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.226 4.226 4 C 0.159 3.841 5 H 0.035 0.965 6 N -0.370 5.370 7 C -0.661 4.661 8 H 0.047 0.953 9 C -0.216 4.216 10 N -0.566 5.566 11 Si 0.933 3.067 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.209 1.209 15 C -0.140 4.140 16 N -0.154 5.154 17 N -0.166 5.166 18 C -0.045 4.045 19 H 0.104 0.896 20 H 0.113 0.887 21 H 0.083 0.917 22 H 0.136 0.864 23 H 0.137 0.863 24 H 0.073 0.927 25 H 0.200 0.800 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.405 -11.330 0.190 11.338 hybrid contribution 0.637 0.436 -0.025 0.772 sum 0.232 -10.893 0.165 10.897 Atomic orbital electron populations 1.20369 0.85933 1.03955 1.03445 1.21045 0.95604 0.86883 1.02802 1.20225 0.92881 0.96338 1.13145 1.17210 0.89712 0.85561 0.91627 0.96520 1.59433 1.07079 1.12011 1.58474 1.22758 1.29818 1.19703 0.93804 0.95276 1.27016 0.93435 0.92953 1.08200 1.70909 1.45075 1.40171 1.00481 0.83002 0.76542 0.76377 0.70776 1.19910 1.20734 1.20934 1.23672 0.98170 0.91855 1.00296 1.77077 0.98223 1.12869 1.27269 1.48599 1.03047 1.06920 1.58061 1.22119 1.02166 0.75910 1.04292 0.89614 0.88682 0.91696 0.86409 0.86309 0.92729 0.80038 0.89944 0.87330 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.58 9.59 71.23 0.68 -1.89 15 2 C 0.06 2.54 6.93 41.40 0.29 2.83 15 3 C -0.21 -9.83 5.19 -20.14 -0.10 -9.94 15 4 C 0.27 13.63 2.31 43.42 0.10 13.73 15 5 H 0.02 0.93 7.01 -2.39 -0.02 0.92 15 6 N -0.84 -39.35 9.01 -174.96 -1.58 -40.93 15 7 C -0.62 -34.04 8.58 25.60 0.22 -33.82 15 8 H 0.03 1.66 7.81 -2.91 -0.02 1.64 15 9 C -0.02 -0.85 5.45 84.65 0.46 -0.39 15 10 N -0.93 -53.81 13.60 21.45 0.29 -53.52 15 11 Si 1.11 49.34 29.91 68.60 2.05 51.39 15 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 15 C 0.04 1.89 11.26 85.24 0.96 2.85 15 16 N -0.33 -13.38 12.58 -57.02 -0.72 -14.09 15 17 N -0.38 -13.50 4.01 -356.03 -1.43 -14.93 15 18 C 0.09 2.09 11.09 127.77 1.42 3.51 15 19 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 20 H 0.09 2.35 7.74 -2.38 -0.02 2.34 15 21 H 0.06 2.55 7.89 -2.39 -0.02 2.54 15 22 H 0.33 15.73 8.29 -89.69 -0.74 14.99 15 23 H 0.33 14.28 7.93 -89.70 -0.71 13.57 15 24 H 0.26 15.30 6.18 -92.71 -0.57 14.73 15 25 H 0.18 7.03 7.38 -2.91 -0.02 7.00 15 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 15 27 H 0.11 1.78 7.68 -2.39 -0.02 1.77 15 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 Total: -1.00 -66.31 243.16 2.56 -63.75 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.08 Total: 31.45 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.02 Total: -23.13 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -3.43 Total: -123.47 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -66.31 2.56 -63.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980222.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.889 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds