Wall clock time and date at job start Mon Mar 30 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39869 * 125.89807 * 2 1 4 4 C 1.35316 * 107.91986 * 180.26642 * 3 2 1 5 5 C 1.50691 * 126.12517 * 179.76456 * 4 3 2 6 6 H 1.09003 * 109.47490 * 155.20733 * 5 4 3 7 7 N 1.46905 * 109.47731 * 35.20241 * 5 4 3 8 8 C 1.50707 * 109.47145 * 275.20379 * 5 4 3 9 9 H 1.07997 * 119.99658 * 0.02562 * 8 5 4 10 10 C 1.37878 * 120.00167 * 180.02562 * 8 5 4 11 11 N 1.31511 * 120.00075 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99884 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46898 * 89.99929 * 12 10 8 14 14 H 1.48499 * 109.46959 * 209.99889 * 12 10 8 15 15 H 1.48498 * 109.47355 * 330.00434 * 12 10 8 16 16 N 1.34945 * 107.74606 * 359.60750 * 4 3 2 17 17 C 1.46496 * 126.03885 * 180.14895 * 16 4 3 18 18 N 1.30836 * 125.89649 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47309 * 90.00164 * 1 2 3 20 20 H 1.09007 * 109.46692 * 209.99623 * 1 2 3 21 21 H 1.08993 * 109.46944 * 329.99599 * 1 2 3 22 22 H 1.07998 * 126.03644 * 359.97438 * 3 2 1 23 23 H 1.00895 * 111.00050 * 294.69174 * 7 5 4 24 24 H 1.00907 * 110.99004 * 58.64086 * 7 5 4 25 25 H 0.97003 * 120.00203 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47172 * 275.56437 * 17 16 4 27 27 H 1.09002 * 109.47058 * 35.56789 * 17 16 4 28 28 H 1.09004 * 109.47427 * 155.56282 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7154 -0.0060 5 6 4.8350 1.5989 -0.0132 6 1 5.6785 1.0568 0.4142 7 7 4.5722 2.8038 0.7851 8 6 5.1592 1.9962 -1.4303 9 1 4.5427 1.6444 -2.2442 10 6 6.2429 2.8088 -1.6877 11 7 6.9940 3.2368 -0.6967 12 14 6.6452 3.3006 -3.4443 13 1 5.9352 4.5608 -3.7804 14 1 8.1098 3.5068 -3.5776 15 1 6.2103 2.2252 -4.3714 16 7 3.6088 -0.6341 -0.0008 17 6 4.7899 -1.5007 -0.0014 18 7 2.2742 -1.0599 -0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.9923 2.1598 -0.0004 23 1 3.8518 3.3686 0.3609 24 1 4.3305 2.5627 1.7347 25 1 7.7567 3.8082 -0.8778 26 1 5.1385 -1.6392 -1.0249 27 1 5.5794 -1.0394 0.5920 28 1 4.5308 -2.4684 0.4283 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:16 Heat of formation + Delta-G solvation = 70.225304 kcal Electronic energy + Delta-G solvation = -12248.138220 eV Core-core repulsion = 10107.605158 eV Total energy + Delta-G solvation = -2140.533063 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.48418 -34.72770 -33.16903 -31.60979 -29.20963 -28.40017 -26.08590 -24.76544 -22.48116 -19.38053 -18.52649 -16.54376 -15.94834 -14.76590 -14.61860 -14.07117 -13.45271 -13.29449 -13.10830 -12.46539 -12.43136 -11.90797 -11.72938 -11.59857 -11.14831 -10.86877 -10.72569 -9.99534 -9.95887 -9.36278 -8.53411 -8.28759 -7.73379 -7.22264 -5.98348 -4.14319 2.67939 3.25136 3.29446 3.36159 3.39334 3.53415 4.42256 5.11930 5.27236 5.48202 5.60644 5.70947 5.89793 5.90380 5.96415 6.10929 6.23206 6.34031 6.60914 6.73660 7.34414 7.40847 7.78894 7.83908 8.02620 8.42104 8.57603 8.91435 9.02374 9.55148 11.05924 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.042934 B = 0.010779 C = 0.010523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.007848 B = 2596.974256 C = 2660.250603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.063 3.937 3 C -0.299 4.299 4 C 0.106 3.894 5 C 0.278 3.722 6 H 0.048 0.952 7 N -0.800 5.800 8 C -0.534 4.534 9 H 0.055 0.945 10 C 0.085 3.915 11 N -0.845 5.845 12 Si 0.889 3.111 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.275 1.275 16 N -0.375 5.375 17 C 0.109 3.891 18 N -0.330 5.330 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.135 0.865 23 H 0.325 0.675 24 H 0.300 0.700 25 H 0.258 0.742 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -4.618 1.773 7.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C -0.328 4.328 4 C -0.025 4.025 5 C 0.166 3.834 6 H 0.065 0.935 7 N -0.325 5.325 8 C -0.573 4.573 9 H 0.073 0.927 10 C -0.122 4.122 11 N -0.479 5.479 12 Si 0.716 3.284 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.200 1.200 16 N -0.157 5.157 17 C -0.033 4.033 18 N -0.153 5.153 19 H 0.088 0.912 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.153 0.847 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.065 -5.679 1.697 7.796 hybrid contribution -0.677 0.784 -0.944 1.401 sum -5.742 -4.895 0.753 7.583 Atomic orbital electron populations 1.20053 0.87717 1.02331 1.02194 1.22129 0.96229 0.91445 1.00464 1.20883 0.91449 0.98893 1.21582 1.23590 1.00236 0.84353 0.94278 1.17935 0.85679 0.84732 0.95076 0.93454 1.59285 1.50075 1.20316 1.02848 1.20743 1.13042 1.33415 0.90109 0.92702 1.24932 0.95584 0.95152 0.96555 1.70101 1.15656 1.31944 1.30243 0.86677 0.77435 0.79067 0.85235 1.20497 1.21157 1.20029 1.48297 1.04635 1.04981 1.57753 1.21688 0.84443 0.93872 1.03259 1.77058 0.87034 1.23086 1.28140 0.91236 0.91735 0.91021 0.84748 0.86232 0.88977 0.93202 0.91022 0.89621 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.45 36.01 0.38 -0.53 15 2 C 0.06 1.22 7.22 -82.40 -0.59 0.63 15 3 C -0.30 -6.24 10.10 -40.01 -0.40 -6.64 15 4 C 0.11 2.37 5.87 -82.27 -0.48 1.89 15 5 C 0.28 6.78 2.89 -70.01 -0.20 6.58 15 6 H 0.05 1.24 7.06 -51.93 -0.37 0.87 15 7 N -0.80 -18.48 8.37 -6.65 -0.06 -18.54 15 8 C -0.53 -14.43 8.66 -34.44 -0.30 -14.73 15 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 15 10 C 0.09 2.31 5.39 -17.82 -0.10 2.22 15 11 N -0.85 -23.81 12.77 55.43 0.71 -23.10 15 12 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 15 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 N -0.38 -7.90 4.01 -63.89 -0.26 -8.16 15 17 C 0.11 1.85 11.19 59.84 0.67 2.52 15 18 N -0.33 -6.92 12.58 33.67 0.42 -6.50 15 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.13 2.62 7.63 -52.49 -0.40 2.22 15 23 H 0.33 7.30 8.26 -39.29 -0.32 6.97 15 24 H 0.30 6.22 9.02 -39.29 -0.35 5.87 15 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 27 H 0.09 1.39 7.18 -51.93 -0.37 1.02 15 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 246.25 15.07 3.71 3.71 Total: -1.00 -30.77 246.25 -5.00 -35.76 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.47 Total: 8.96 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.03 Total: -8.07 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.82 Total: -56.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.77 -5.00 -35.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.988 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds