Wall clock time and date at job start Mon Mar 30 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39875 * 125.90178 * 2 1 4 4 C 1.35311 * 107.91910 * 180.14509 * 3 2 1 5 5 C 1.50703 * 126.12294 * 179.90808 * 4 3 2 6 6 H 1.09007 * 109.46560 * 204.68917 * 5 4 3 7 7 N 1.46898 * 109.47348 * 324.68634 * 5 4 3 8 8 C 1.50701 * 109.47151 * 84.69272 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 5 4 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 5 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 5 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 N 1.34947 * 107.74752 * 359.64545 * 4 3 2 17 17 C 1.46502 * 126.03761 * 180.25112 * 16 4 3 18 18 N 1.30843 * 125.89992 * 179.74936 * 2 1 3 19 19 H 1.09002 * 109.47090 * 270.23113 * 1 2 3 20 20 H 1.09004 * 109.47016 * 30.23159 * 1 2 3 21 21 H 1.08996 * 109.47277 * 150.22855 * 1 2 3 22 22 H 1.07995 * 126.03589 * 0.02562 * 3 2 1 23 23 H 1.00901 * 110.99361 * 59.99871 * 7 5 4 24 24 H 1.00897 * 111.00235 * 183.95410 * 7 5 4 25 25 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47223 * 89.99502 * 17 16 4 27 27 H 1.08993 * 109.46983 * 210.00087 * 17 16 4 28 28 H 1.09002 * 109.46853 * 329.99612 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0033 5 6 4.8350 1.5988 -0.0064 6 1 5.6757 1.0553 -0.4378 7 7 4.5671 2.8014 -0.8063 8 6 5.1685 1.9999 1.4075 9 1 4.5573 1.6503 2.2263 10 6 6.2502 2.8182 1.6549 11 7 6.5381 3.1726 2.8883 12 14 7.3071 3.4233 0.2385 13 1 6.7656 4.7096 -0.2688 14 1 8.7004 3.6248 0.7113 15 1 7.2955 2.4165 -0.8531 16 7 3.6087 -0.6342 0.0027 17 6 4.7898 -1.5009 0.0070 18 7 2.2742 -1.0599 0.0046 19 1 -0.3633 0.0041 1.0277 20 1 -0.3633 0.8879 -0.5174 21 1 -0.3633 -0.8920 -0.5103 22 1 1.9923 2.1598 0.0004 23 1 3.7913 3.3229 -0.4265 24 1 5.3911 3.3794 -0.8775 25 1 7.2993 3.7480 3.0625 26 1 5.0824 -1.7112 1.0358 27 1 4.5564 -2.4355 -0.5028 28 1 5.6094 -1.0006 -0.5088 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:18 Heat of formation + Delta-G solvation = 75.105625 kcal Electronic energy + Delta-G solvation = -12298.636614 eV Core-core repulsion = 10158.315177 eV Total energy + Delta-G solvation = -2140.321436 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.51226 -35.18216 -33.22943 -31.94594 -29.35078 -28.65638 -26.26674 -24.77952 -22.62020 -19.45430 -18.51118 -17.16774 -16.23543 -15.07199 -14.65027 -14.12112 -13.57827 -13.38650 -13.09043 -12.67224 -12.39849 -12.23892 -11.80320 -11.69870 -11.47650 -10.93848 -10.89903 -10.27477 -9.92772 -9.65113 -8.88870 -8.41057 -7.80608 -7.53050 -6.33230 -4.38622 2.66720 3.05712 3.17992 3.19642 3.20945 3.55844 4.12643 4.95183 5.09926 5.42823 5.56537 5.62292 5.70466 5.90528 5.94151 5.96683 6.14130 6.29673 6.56615 6.61306 7.11053 7.28938 7.41509 7.72488 7.97773 8.16923 8.37736 8.48264 8.74284 9.23624 10.79105 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.047962 B = 0.011391 C = 0.010859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.651126 B = 2457.427762 C = 2577.830104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.063 3.937 3 C -0.278 4.278 4 C 0.153 3.847 5 C 0.234 3.766 6 H 0.049 0.951 7 N -0.843 5.843 8 C -0.548 4.548 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.884 5.884 12 Si 0.872 3.128 13 H -0.272 1.272 14 H -0.288 1.288 15 H -0.260 1.260 16 N -0.376 5.376 17 C 0.108 3.892 18 N -0.323 5.323 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.138 0.862 23 H 0.338 0.662 24 H 0.321 0.679 25 H 0.268 0.732 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -3.868 -6.218 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C -0.307 4.307 4 C 0.025 3.975 5 C 0.123 3.877 6 H 0.067 0.933 7 N -0.378 5.378 8 C -0.588 4.588 9 H 0.096 0.904 10 C -0.128 4.128 11 N -0.521 5.521 12 Si 0.700 3.300 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.185 1.185 16 N -0.158 5.158 17 C -0.034 4.034 18 N -0.146 5.146 19 H 0.088 0.912 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.156 0.844 23 H 0.150 0.850 24 H 0.137 0.863 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.412 -5.656 -6.696 9.813 hybrid contribution 1.032 1.816 0.413 2.130 sum -3.380 -3.839 -6.283 8.102 Atomic orbital electron populations 1.20060 0.87570 1.02416 1.02267 1.22152 0.96322 0.91368 1.00409 1.20832 0.91094 0.98982 1.19839 1.21187 0.97527 0.83595 0.95181 1.18019 0.88723 0.87715 0.93266 0.93313 1.59518 1.10235 1.10732 1.57317 1.21510 1.13871 1.31580 0.91867 0.90434 1.25004 0.96590 0.95497 0.95724 1.69885 1.28166 1.35004 1.19025 0.87022 0.80174 0.80052 0.82702 1.19808 1.21493 1.18477 1.48169 1.04890 1.04523 1.58251 1.21703 0.84443 0.94056 1.03201 1.77091 0.86554 1.22837 1.28164 0.91157 0.90902 0.91702 0.84382 0.84985 0.86272 0.92154 0.90962 0.90346 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.45 36.00 0.38 -0.53 15 2 C 0.06 1.22 7.22 -82.40 -0.59 0.63 15 3 C -0.28 -5.85 10.06 -40.01 -0.40 -6.26 15 4 C 0.15 3.44 5.91 -82.26 -0.49 2.95 15 5 C 0.23 5.49 2.50 -70.02 -0.18 5.31 15 6 H 0.05 1.15 6.01 -51.93 -0.31 0.84 15 7 N -0.84 -18.36 9.00 -6.65 -0.06 -18.42 15 8 C -0.55 -14.89 9.29 -34.44 -0.32 -15.21 15 9 H 0.08 2.38 7.98 -52.49 -0.42 1.96 15 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 11 N -0.88 -25.85 13.96 55.43 0.77 -25.07 15 12 Si 0.87 20.05 24.61 -169.99 -4.18 15.86 15 13 H -0.27 -5.99 7.00 56.52 0.40 -5.59 15 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.26 -5.77 6.55 56.52 0.37 -5.40 15 16 N -0.38 -7.91 4.01 -63.88 -0.26 -8.17 15 17 C 0.11 1.80 11.27 59.85 0.67 2.47 15 18 N -0.32 -6.75 12.58 33.67 0.42 -6.33 15 19 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.14 2.69 7.49 -52.49 -0.39 2.30 15 23 H 0.34 7.02 8.05 -39.29 -0.32 6.71 15 24 H 0.32 6.97 4.28 -39.29 -0.17 6.81 15 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.08 1.33 6.98 -51.93 -0.36 0.97 15 LS Contribution 236.79 15.07 3.57 3.57 Total: -1.00 -31.11 236.79 -4.02 -35.13 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -3.26 Total: 12.07 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.03 Total: -8.64 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.88 Total: -57.99 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.18 Total: 15.86 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.11 -4.02 -35.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.236 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds