Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39874 * 125.89917 * 2 1 4 4 C 1.35314 * 107.92203 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.12921 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46699 * 355.00232 * 5 4 3 7 7 N 1.46901 * 109.47247 * 235.00285 * 5 4 3 8 8 C 1.53002 * 109.47081 * 114.99938 * 5 4 3 9 9 C 1.50696 * 109.46919 * 185.00082 * 8 5 4 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 5 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 5 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47035 * 60.00183 * 13 11 9 15 15 H 1.48503 * 109.46845 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47237 * 299.99939 * 13 11 9 17 17 N 1.34951 * 107.74387 * 0.22998 * 4 3 2 18 18 H 0.97005 * 126.03444 * 179.77552 * 17 4 3 19 19 N 1.30835 * 125.90138 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47391 * 89.99985 * 1 2 3 21 21 H 1.08993 * 109.47446 * 210.00125 * 1 2 3 22 22 H 1.09005 * 109.46848 * 330.00250 * 1 2 3 23 23 H 1.07999 * 126.03752 * 0.02562 * 3 2 1 24 24 H 1.00902 * 110.99903 * 176.04389 * 7 5 4 25 25 H 1.00904 * 110.99895 * 299.99718 * 7 5 4 26 26 H 1.09000 * 109.46497 * 65.00348 * 8 5 4 27 27 H 1.08999 * 109.46623 * 305.00412 * 8 5 4 28 28 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8351 1.5990 -0.0013 6 1 4.5291 2.6413 -0.0909 7 7 5.6969 1.2424 -1.1363 8 6 5.6063 1.4043 1.3057 9 6 6.7576 2.3752 1.3589 10 1 6.9230 3.0620 0.5420 11 6 7.6005 2.3858 2.4500 12 7 7.4028 1.5450 3.4418 13 14 9.0281 3.5888 2.5157 14 1 8.5080 4.9782 2.4505 15 1 9.7765 3.3999 3.7843 16 1 9.9342 3.3449 1.3647 17 7 3.6087 -0.6341 -0.0061 18 1 4.3908 -1.2079 -0.0108 19 7 2.2742 -1.0598 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.9923 2.1598 0.0004 24 1 6.4904 1.8628 -1.1967 25 1 5.9941 0.2800 -1.0762 26 1 5.9883 0.3846 1.3536 27 1 4.9408 1.5831 2.1502 28 1 6.6617 0.9201 3.4076 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260080612.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = 23.711965 kcal Electronic energy + Delta-G solvation = -11951.132250 eV Core-core repulsion = 9808.582218 eV Total energy + Delta-G solvation = -2142.550033 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.25507 -37.58900 -34.80940 -33.46630 -30.99448 -29.64269 -28.70144 -26.15316 -23.63255 -21.39856 -20.66134 -19.05934 -18.36617 -16.81627 -15.95789 -15.65468 -15.31252 -15.18549 -14.60566 -14.27279 -14.07340 -13.58154 -13.49966 -13.09225 -12.68176 -12.61714 -12.32337 -11.95886 -11.56534 -10.83130 -10.62043 -10.29740 -9.79308 -9.49517 -8.73372 -6.46627 0.88293 1.53425 1.60474 1.78527 1.79319 1.90211 2.53978 3.11085 3.50230 3.81236 3.92240 4.19707 4.37000 4.50772 4.70497 4.83703 4.88719 5.01358 5.04576 5.11207 5.34360 5.76007 5.83613 6.07351 6.11776 6.29577 6.47927 6.48185 6.71113 7.36694 8.66489 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.067836 B = 0.007944 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.663039 B = 3523.869933 C = 3616.453556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.069 3.931 3 C -0.289 4.289 4 C 0.111 3.889 5 C 0.169 3.831 6 H 0.095 0.905 7 N -0.825 5.825 8 C -0.008 4.008 9 C -0.611 4.611 10 H 0.065 0.935 11 C -0.036 4.036 12 N -0.937 5.937 13 Si 1.118 2.882 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.265 1.265 17 N -0.474 5.474 18 H 0.438 0.562 19 N -0.330 5.330 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.160 0.840 24 H 0.355 0.645 25 H 0.332 0.668 26 H -0.010 1.010 27 H -0.016 1.016 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -0.006 -7.540 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.319 4.319 4 C -0.019 4.019 5 C 0.055 3.945 6 H 0.113 0.887 7 N -0.354 5.354 8 C -0.047 4.047 9 C -0.649 4.649 10 H 0.083 0.917 11 C -0.234 4.234 12 N -0.574 5.574 13 Si 0.939 3.061 14 H -0.193 1.193 15 H -0.217 1.217 16 H -0.190 1.190 17 N -0.181 5.181 18 H 0.282 0.718 19 N -0.154 5.154 20 H 0.111 0.889 21 H 0.095 0.905 22 H 0.113 0.887 23 H 0.178 0.822 24 H 0.169 0.831 25 H 0.143 0.857 26 H 0.008 0.992 27 H 0.002 0.998 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.372 -0.601 -7.099 10.252 hybrid contribution -0.013 -0.393 0.216 0.449 sum -7.386 -0.994 -6.883 10.145 Atomic orbital electron populations 1.20308 0.83731 1.04307 1.04210 1.22983 0.98812 0.89982 0.97998 1.21427 0.90763 1.00927 1.18743 1.21376 0.97415 0.84966 0.98172 1.19898 0.87918 0.96724 0.89964 0.88661 1.59184 1.25462 1.08312 1.42438 1.19862 0.95120 0.95715 0.94032 1.22311 1.13705 1.21379 1.07490 0.91720 1.27412 1.03798 1.00084 0.92104 1.70938 1.31478 1.21031 1.33971 0.82910 0.72706 0.73903 0.76545 1.19350 1.21652 1.18954 1.46162 1.07174 1.05080 1.59732 0.71811 1.77131 0.86896 1.23682 1.27707 0.88894 0.90540 0.88667 0.82215 0.83068 0.85669 0.99153 0.99759 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.45 71.24 0.74 -0.66 15 2 C 0.07 2.18 7.22 43.10 0.31 2.49 15 3 C -0.29 -9.84 10.63 21.99 0.23 -9.61 15 4 C 0.11 4.13 6.01 41.40 0.25 4.38 15 5 C 0.17 6.64 3.24 44.17 0.14 6.78 15 6 H 0.10 3.77 8.11 -2.39 -0.02 3.75 15 7 N -0.83 -28.90 9.18 -171.80 -1.58 -30.48 15 8 C -0.01 -0.40 3.92 29.85 0.12 -0.28 15 9 C -0.61 -32.12 8.55 25.60 0.22 -31.90 15 10 H 0.06 3.20 7.14 -2.91 -0.02 3.18 15 11 C -0.04 -2.00 5.46 84.66 0.46 -1.54 15 12 N -0.94 -56.84 13.65 21.45 0.29 -56.55 15 13 Si 1.12 47.90 29.90 68.60 2.05 49.95 15 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 15 H -0.29 -12.80 7.11 99.48 0.71 -12.09 15 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 17 N -0.47 -16.96 7.36 -48.00 -0.35 -17.31 15 18 H 0.44 14.20 8.96 -213.33 -1.91 12.29 15 19 N -0.33 -11.76 12.70 -47.38 -0.60 -12.36 15 20 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.09 1.62 8.14 -2.38 -0.02 1.60 15 23 H 0.16 4.71 8.06 -2.91 -0.02 4.69 15 24 H 0.35 12.47 7.90 -89.69 -0.71 11.76 15 25 H 0.33 11.07 8.99 -89.69 -0.81 10.26 15 26 H -0.01 -0.50 8.00 -2.39 -0.02 -0.52 15 27 H -0.02 -0.87 8.01 -2.39 -0.02 -0.89 15 28 H 0.25 15.67 7.22 -92.71 -0.67 15.00 15 Total: -1.00 -64.73 246.41 0.15 -64.57 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -2.14 Total: 32.52 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 2.48 Total: -30.34 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -2.24 Total: -116.70 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.05 Total: 49.95 kcal Total: -64.73 0.15 -64.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260080612.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.285 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds