Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46906 * 2 1 4 4 H 1.08996 * 109.47350 * 305.00081 * 3 2 1 5 5 C 1.50703 * 109.47122 * 185.00037 * 3 2 1 6 6 H 1.07998 * 119.99936 * 239.99882 * 5 3 2 7 7 C 1.37876 * 119.99990 * 59.99726 * 5 3 2 8 8 N 1.31516 * 120.00177 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99861 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47480 * 90.00328 * 9 7 5 11 11 H 1.48506 * 109.47114 * 210.00376 * 9 7 5 12 12 H 1.48502 * 109.47190 * 329.99781 * 9 7 5 13 13 C 1.50702 * 109.47342 * 64.99903 * 3 2 1 14 14 O 1.34752 * 126.43906 * 60.02317 * 13 3 2 15 15 C 1.33974 * 107.75151 * 179.97438 * 14 13 3 16 16 N 1.30250 * 108.76338 * 0.02562 * 15 14 13 17 17 C 1.34325 * 126.44374 * 240.02117 * 13 3 2 18 18 C 1.50702 * 126.16691 * 0.05287 * 17 13 3 19 19 H 1.09004 * 109.47154 * 300.00121 * 1 2 3 20 20 H 1.09000 * 109.47159 * 60.00205 * 1 2 3 21 21 H 1.08994 * 109.46971 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47103 * 240.00001 * 2 1 3 23 23 H 1.09000 * 109.47159 * 119.99795 * 2 1 3 24 24 H 0.96995 * 120.00243 * 179.97438 * 8 7 5 25 25 H 1.07997 * 125.61455 * 180.02562 * 15 14 13 26 26 H 1.09002 * 109.46441 * 269.96520 * 18 17 13 27 27 H 1.08996 * 109.47080 * 29.96344 * 18 17 13 28 28 H 1.09000 * 109.47264 * 149.97144 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3519 -0.7598 11 1 6.3836 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 6 1.6413 2.1163 1.2877 14 8 1.9898 1.7345 2.5321 15 6 1.4326 2.5952 3.3945 16 7 0.7589 3.4845 2.7225 17 6 0.8718 3.2104 1.4108 18 6 0.2468 3.9897 0.2824 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.8293 -0.0604 -2.9502 25 1 1.5267 2.5576 4.4697 26 1 0.9327 4.7723 -0.0420 27 1 0.0402 3.3190 -0.5516 28 1 -0.6842 4.4415 0.6247 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260089029.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = -19.233186 kcal Electronic energy + Delta-G solvation = -12476.234889 eV Core-core repulsion = 10299.529864 eV Total energy + Delta-G solvation = -2176.705025 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.08456 -37.12905 -35.88428 -33.83727 -32.00047 -29.69512 -27.65506 -25.26190 -23.57237 -22.13019 -21.03520 -18.58283 -17.83545 -17.28751 -16.68582 -15.66877 -15.43909 -14.75916 -14.21212 -14.06185 -13.73503 -13.54033 -13.18926 -12.99327 -12.75907 -12.58637 -12.08026 -11.91496 -11.83310 -11.66469 -11.16285 -11.12472 -10.51373 -9.30895 -8.16454 -6.32012 0.81382 1.40439 1.41997 1.51705 1.85825 2.18163 2.40720 3.10292 3.47664 4.13139 4.20119 4.45307 4.53247 4.69519 4.75842 4.80386 4.92597 5.01863 5.14585 5.25264 5.27896 5.40243 5.56932 5.64471 5.79847 5.95348 6.22581 6.70389 6.94161 7.35581 8.86785 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.037901 B = 0.012744 C = 0.011531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.597756 B = 2196.650915 C = 2427.654359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C 0.123 3.877 4 H 0.048 0.952 5 C -0.539 4.539 6 H 0.041 0.959 7 C 0.025 3.975 8 N -0.906 5.906 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.001 3.999 14 O -0.218 6.218 15 C 0.145 3.855 16 N -0.508 5.508 17 C -0.069 4.069 18 C -0.059 4.059 19 H 0.035 0.965 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.267 0.733 25 H 0.291 0.709 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 1.845 5.236 6.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.066 0.934 5 C -0.577 4.577 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.200 1.200 13 C -0.052 4.052 14 O -0.104 6.104 15 C -0.081 4.081 16 N -0.238 5.238 17 C -0.187 4.187 18 C -0.116 4.116 19 H 0.054 0.946 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.306 0.694 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.121 2.219 5.328 7.091 hybrid contribution 1.422 -0.579 -0.265 1.558 sum -2.699 1.639 5.062 5.966 Atomic orbital electron populations 1.21705 0.96122 1.01016 1.00356 1.21490 0.94375 0.97877 1.01275 1.17480 0.95211 0.92658 0.84213 0.93443 1.21220 0.91669 1.38986 1.05788 0.94028 1.25592 1.02519 0.94371 0.95014 1.69938 1.36563 1.38198 1.09687 0.85596 0.80304 0.78477 0.77549 1.19982 1.20077 1.19986 1.24146 0.98016 0.97604 0.85463 1.84433 1.59689 1.49580 1.16710 1.28909 0.94061 0.85888 0.99275 1.70191 1.22519 1.27087 1.04042 1.21757 1.05011 0.98726 0.93168 1.20035 1.00195 0.98583 0.92786 0.94605 0.92976 0.92300 0.90245 0.95536 0.92333 0.69396 0.91137 0.90939 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.73 71.98 0.70 -4.53 15 2 C -0.11 -5.30 5.23 30.60 0.16 -5.14 15 3 C 0.12 6.15 2.13 -12.28 -0.03 6.12 15 4 H 0.05 2.48 6.82 -2.39 -0.02 2.46 15 5 C -0.54 -29.75 8.55 25.60 0.22 -29.54 15 6 H 0.04 2.36 7.74 -2.91 -0.02 2.34 15 7 C 0.03 1.36 5.29 84.65 0.45 1.81 15 8 N -0.91 -49.65 11.29 21.45 0.24 -49.40 15 9 Si 0.96 42.85 29.54 68.60 2.03 44.88 15 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 13 C 0.00 0.05 4.81 24.79 0.12 0.16 15 14 O -0.22 -9.25 10.78 -3.79 -0.04 -9.29 15 15 C 0.14 4.84 13.23 130.48 1.73 6.57 15 16 N -0.51 -19.51 11.29 -304.06 -3.43 -22.95 15 17 C -0.07 -2.84 7.11 41.26 0.29 -2.55 15 18 C -0.06 -2.04 10.07 71.24 0.72 -1.32 15 19 H 0.03 1.36 7.38 -2.39 -0.02 1.34 15 20 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.08 4.13 5.95 -2.39 -0.01 4.11 15 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 24 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15 25 H 0.29 5.71 8.06 -2.91 -0.02 5.68 15 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 27 H 0.07 2.49 7.16 -2.39 -0.02 2.47 15 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 Total: -1.00 -62.12 242.49 4.29 -57.83 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.14 Total: 7.33 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.36 Total: -28.40 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -3.19 Total: -72.35 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.04 Total: -9.29 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.12 4.29 -57.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089029.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.598 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds