Wall clock time and date at job start Mon Mar 30 2020 02:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47120 * 2 1 4 4 H 1.08997 * 109.47256 * 305.57891 * 3 2 1 5 5 C 1.50697 * 109.47498 * 65.57952 * 3 2 1 6 6 H 1.08002 * 119.99658 * 62.82611 * 5 3 2 7 7 C 1.37872 * 120.00233 * 242.82805 * 5 3 2 8 8 N 1.31520 * 120.00074 * 173.30000 * 7 5 3 9 9 Si 1.86802 * 120.00086 * 353.30213 * 7 5 3 10 10 H 1.48492 * 109.47143 * 84.75301 * 9 7 5 11 11 H 1.48497 * 109.47076 * 204.75401 * 9 7 5 12 12 H 1.48497 * 109.46786 * 324.75177 * 9 7 5 13 13 C 1.50701 * 109.47382 * 185.58108 * 3 2 1 14 14 O 1.34752 * 126.44078 * 299.69063 * 13 3 2 15 15 C 1.33968 * 107.75486 * 179.83424 * 14 13 3 16 16 N 1.30258 * 108.76087 * 0.43076 * 15 14 13 17 17 C 1.34326 * 126.44693 * 119.99482 * 13 3 2 18 18 C 1.50704 * 126.16534 * 0.02562 * 17 13 3 19 19 H 1.08996 * 109.46993 * 174.38109 * 1 2 3 20 20 H 1.08999 * 109.46905 * 54.38605 * 1 2 3 21 21 H 1.08998 * 109.46966 * 294.38496 * 1 2 3 22 22 H 1.09003 * 109.46690 * 119.99845 * 2 1 3 23 23 H 1.08998 * 109.47100 * 239.99987 * 2 1 3 24 24 H 0.97002 * 119.99799 * 179.97438 * 8 7 5 25 25 H 1.08000 * 125.62170 * 180.13733 * 15 14 13 26 26 H 1.09004 * 109.46680 * 89.99840 * 18 17 13 27 27 H 1.09000 * 109.47572 * 209.99804 * 18 17 13 28 28 H 1.09000 * 109.47371 * 330.00665 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9843 -0.8358 5 6 1.6537 2.1119 1.2936 6 1 2.0399 1.7392 2.2309 7 6 0.8073 3.2002 1.2808 8 7 0.3651 3.7028 2.4129 9 14 0.2885 3.9608 -0.3446 10 1 -0.8782 3.2201 -0.8877 11 1 -0.0840 5.3821 -0.1294 12 1 1.4155 3.8850 -1.3086 13 6 3.5407 1.4448 -0.1382 14 8 4.4233 0.8788 0.7083 15 6 5.6530 1.1022 0.2258 16 7 5.5522 1.7897 -0.8760 17 6 4.2503 2.0162 -1.1252 18 6 3.6887 2.7750 -2.3000 19 1 -0.3633 -1.0227 -0.1006 20 1 -0.3633 0.5984 -0.8354 21 1 -0.3633 0.4243 0.9360 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 -0.2301 4.4687 2.4038 25 1 6.5760 0.7712 0.6784 26 1 3.6021 3.8307 -2.0427 27 1 4.3537 2.6631 -3.1564 28 1 2.7041 2.3802 -2.5504 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260089048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:02 Heat of formation + Delta-G solvation = -20.618256 kcal Electronic energy + Delta-G solvation = -12527.239581 eV Core-core repulsion = 10350.474495 eV Total energy + Delta-G solvation = -2176.765086 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.08602 -37.19612 -35.90854 -34.06890 -32.28954 -29.72277 -27.74159 -25.47225 -23.42896 -22.02803 -21.03869 -19.21291 -17.93023 -17.34587 -16.36739 -15.66013 -15.54011 -14.97175 -14.75825 -14.17793 -13.99951 -13.59843 -13.08962 -13.01133 -12.72133 -12.35521 -12.19592 -11.86568 -11.78776 -11.61271 -11.40245 -11.10307 -10.73536 -9.32438 -8.33904 -6.40278 0.78745 1.34817 1.38825 1.46562 1.83692 2.15192 2.32126 3.04775 3.46021 3.96803 4.11706 4.27549 4.49400 4.55198 4.69533 4.76122 4.87196 4.94707 5.05884 5.14420 5.23816 5.29699 5.42076 5.52614 5.62368 5.66873 6.22665 6.64223 6.91512 7.24265 8.82311 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.032973 B = 0.015402 C = 0.014069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.964810 B = 1817.540821 C = 1989.654426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.086 3.914 4 H 0.077 0.923 5 C -0.508 4.508 6 H 0.027 0.973 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.921 3.079 10 H -0.251 1.251 11 H -0.291 1.291 12 H -0.228 1.228 13 C -0.008 4.008 14 O -0.217 6.217 15 C 0.146 3.854 16 N -0.509 5.509 17 C -0.071 4.071 18 C -0.064 4.064 19 H 0.070 0.930 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.268 0.732 25 H 0.290 0.710 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -4.752 -8.942 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.067 3.933 4 H 0.095 0.905 5 C -0.545 4.545 6 H 0.045 0.955 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.744 3.256 10 H -0.175 1.175 11 H -0.218 1.218 12 H -0.151 1.151 13 C -0.061 4.061 14 O -0.104 6.104 15 C -0.080 4.080 16 N -0.239 5.239 17 C -0.189 4.189 18 C -0.121 4.121 19 H 0.089 0.911 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.305 0.695 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.567 -4.441 -9.184 11.177 hybrid contribution -0.633 0.455 0.674 1.031 sum 3.934 -3.986 -8.510 10.187 Atomic orbital electron populations 1.21608 0.95029 1.01342 1.01348 1.21542 0.96826 0.95727 1.00263 1.18106 0.81587 0.96306 0.97321 0.90502 1.20867 1.27981 1.13928 0.91733 0.95504 1.25947 0.95084 0.96483 1.00112 1.70045 1.34144 1.25104 1.28753 0.86142 0.80947 0.77793 0.80755 1.17473 1.21773 1.15066 1.24442 0.94831 0.97811 0.89054 1.84429 1.17861 1.61075 1.46996 1.28901 0.88619 0.98653 0.91803 1.70183 1.19987 1.16800 1.16883 1.21749 0.88751 1.06973 1.01439 1.20156 1.00658 0.98198 0.93096 0.91145 0.93031 0.94251 0.93851 0.91948 0.92295 0.69482 0.91686 0.89486 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.64 71.98 0.69 -4.28 15 2 C -0.11 -4.16 5.37 30.59 0.16 -3.99 15 3 C 0.09 3.88 2.10 -12.29 -0.03 3.86 15 4 H 0.08 3.29 3.38 -2.39 -0.01 3.28 15 5 C -0.51 -28.22 7.94 25.60 0.20 -28.02 15 6 H 0.03 1.71 8.06 -2.91 -0.02 1.69 15 7 C 0.02 1.25 5.47 84.65 0.46 1.71 15 8 N -0.94 -57.41 13.96 21.45 0.30 -57.11 15 9 Si 0.92 40.74 27.01 68.60 1.85 42.59 15 10 H -0.25 -10.26 7.11 99.48 0.71 -9.55 15 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 12 H -0.23 -8.98 5.60 99.48 0.56 -8.42 15 13 C -0.01 -0.33 5.87 24.79 0.15 -0.19 15 14 O -0.22 -9.12 10.78 -3.74 -0.04 -9.16 15 15 C 0.15 4.88 13.23 130.48 1.73 6.60 15 16 N -0.51 -19.33 11.29 -304.06 -3.43 -22.77 15 17 C -0.07 -2.86 7.11 41.26 0.29 -2.57 15 18 C -0.06 -2.13 9.37 71.24 0.67 -1.46 15 19 H 0.07 2.08 8.14 -2.39 -0.02 2.07 15 20 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.04 1.67 7.58 -2.39 -0.02 1.65 15 22 H 0.04 1.79 8.14 -2.39 -0.02 1.78 15 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 25 H 0.29 5.74 8.06 -2.91 -0.02 5.71 15 26 H 0.06 2.17 7.91 -2.39 -0.02 2.16 15 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 28 H 0.08 2.42 7.01 -2.39 -0.02 2.40 15 Total: -1.00 -67.60 239.98 4.00 -63.59 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.99 Total: 11.19 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 4.33 Total: -28.34 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.13 Total: -79.88 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.04 Total: -9.16 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.85 Total: 42.59 kcal Total: -67.60 4.00 -63.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.974 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds