Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30836 * 125.84207 * 2 1 4 4 N 1.40068 * 108.38840 * 180.25717 * 3 2 1 5 5 C 1.46503 * 126.04041 * 179.72109 * 4 3 2 6 6 C 1.35252 * 107.91247 * 359.71556 * 4 3 2 7 7 N 1.39214 * 126.21629 * 179.97438 * 6 4 3 8 8 C 1.36165 * 107.55934 * 0.02562 * 6 4 3 9 9 C 1.50706 * 126.08857 * 179.97438 * 8 6 4 10 10 C 1.50703 * 109.47001 * 89.99958 * 9 8 6 11 11 H 1.08005 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00254 * 180.02562 * 12 10 9 14 14 Si 1.86811 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46778 * 89.99559 * 14 12 10 16 16 H 1.48493 * 109.46886 * 209.99446 * 14 12 10 17 17 H 1.48492 * 109.47026 * 329.99859 * 14 12 10 18 18 H 1.08997 * 109.47242 * 270.22030 * 1 2 3 19 19 H 1.09000 * 109.46426 * 30.21780 * 1 2 3 20 20 H 1.09002 * 109.47206 * 150.20974 * 1 2 3 21 21 H 1.09002 * 109.46525 * 269.99700 * 5 4 3 22 22 H 1.08994 * 109.47183 * 29.99515 * 5 4 3 23 23 H 1.09000 * 109.46959 * 150.00041 * 5 4 3 24 24 H 0.96991 * 119.99415 * 180.02562 * 7 6 4 25 25 H 0.96998 * 119.99981 * 0.02562 * 7 6 4 26 26 H 1.09000 * 109.46646 * 209.99416 * 9 8 6 27 27 H 1.09000 * 109.47248 * 330.00133 * 9 8 6 28 28 H 0.97008 * 120.00053 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0606 0.0000 4 7 3.6093 0.6405 -0.0060 5 6 4.7869 1.5121 -0.0137 6 6 3.6202 -0.7120 -0.0032 7 7 4.7499 -1.5255 -0.0078 8 6 2.3253 -1.1332 0.0038 9 6 1.8579 -2.5659 0.0084 10 6 1.7089 -3.0410 1.4308 11 1 1.9310 -2.3725 2.2495 12 6 1.2892 -4.3291 1.6870 13 7 1.1587 -4.7436 2.9282 14 14 0.9058 -5.4856 0.2709 15 1 2.1352 -6.2266 -0.1097 16 1 -0.1436 -6.4493 0.6891 17 1 0.4214 -4.7000 -0.8924 18 1 -0.3633 0.0040 1.0276 19 1 -0.3632 0.8881 -0.5172 20 1 -0.3634 -0.8919 -0.5106 21 1 5.0736 1.7260 -1.0433 22 1 4.5521 2.4446 0.4993 23 1 5.6110 1.0139 0.4969 24 1 4.6525 -2.4905 -0.0055 25 1 5.6343 -1.1272 -0.0131 26 1 0.8966 -2.6360 -0.5006 27 1 2.5888 -3.1882 -0.5079 28 1 0.8638 -5.6500 3.1084 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144218.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = 70.824407 kcal Electronic energy + Delta-G solvation = -12215.230283 eV Core-core repulsion = 10074.723199 eV Total energy + Delta-G solvation = -2140.507084 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.48264 -34.26226 -33.77798 -32.26852 -29.77871 -29.04338 -26.53901 -24.68397 -21.98913 -19.45046 -18.96969 -16.63907 -16.52569 -15.60425 -15.02152 -14.36154 -13.93970 -13.01303 -12.94250 -12.61335 -12.23056 -11.95365 -11.67839 -11.62549 -11.38581 -10.66091 -10.21819 -10.15187 -9.92028 -9.52975 -9.18356 -8.46000 -7.93804 -6.67246 -5.94708 -3.90714 2.76968 3.01242 3.34052 3.42978 3.47366 3.77931 4.35591 4.51645 4.94106 5.35900 5.37484 5.53391 5.64040 5.90060 6.28247 6.34633 6.50516 6.62916 6.86085 7.08029 7.22488 7.54980 7.64961 7.87377 8.06265 8.20923 8.68148 8.71386 9.14694 9.68041 11.18949 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043253 B = 0.011482 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.196390 B = 2438.059142 C = 2718.908541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.104 3.896 3 N -0.333 5.333 4 N -0.414 5.414 5 C 0.114 3.886 6 C 0.347 3.653 7 N -0.856 5.856 8 C -0.253 4.253 9 C 0.066 3.934 10 C -0.500 4.500 11 H 0.069 0.931 12 C 0.064 3.936 13 N -0.907 5.907 14 Si 0.875 3.125 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.264 1.264 18 H 0.075 0.925 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.418 0.582 25 H 0.388 0.612 26 H 0.023 0.977 27 H 0.007 0.993 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.821 7.619 -7.344 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 N -0.157 5.157 4 N -0.203 5.203 5 C -0.029 4.029 6 C 0.123 3.877 7 N -0.406 5.406 8 C -0.268 4.268 9 C 0.028 3.972 10 C -0.538 4.538 11 H 0.087 0.913 12 C -0.136 4.136 13 N -0.547 5.547 14 Si 0.702 3.298 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.189 1.189 18 H 0.094 0.906 19 H 0.078 0.922 20 H 0.095 0.905 21 H 0.079 0.921 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.251 0.749 25 H 0.215 0.785 26 H 0.041 0.959 27 H 0.025 0.975 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.841 8.863 -7.238 12.848 hybrid contribution 0.387 -1.777 -0.467 1.878 sum 6.228 7.086 -7.706 12.181 Atomic orbital electron populations 1.20079 0.87413 1.02013 1.02856 1.21860 0.96394 0.90355 0.97463 1.77200 0.84800 1.21696 1.32048 1.47943 1.05645 1.02427 1.64328 1.21496 0.84620 0.94845 1.01919 1.17657 0.89376 0.81888 0.98770 1.41434 1.03490 1.08447 1.87277 1.19464 0.88822 0.97666 1.20872 1.17883 0.95271 0.86791 0.97266 1.21155 1.43915 0.97437 0.91338 0.91294 1.25032 0.95364 0.98015 0.95220 1.69922 1.48360 1.17839 1.18568 0.86853 0.78319 0.81020 0.83564 1.20530 1.21518 1.18880 0.90596 0.92232 0.90474 0.92100 0.89920 0.90970 0.74930 0.78540 0.95919 0.97457 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.26 36.01 0.37 -0.81 15 2 C 0.10 2.24 7.21 -82.44 -0.59 1.65 15 3 N -0.33 -6.94 12.56 33.65 0.42 -6.51 15 4 N -0.41 -7.67 4.02 -67.24 -0.27 -7.94 15 5 C 0.11 1.43 11.28 59.85 0.68 2.10 15 6 C 0.35 6.92 7.94 -153.40 -1.22 5.70 15 7 N -0.86 -13.70 9.10 31.11 0.28 -13.41 15 8 C -0.25 -5.75 5.32 -104.79 -0.56 -6.31 15 9 C 0.07 1.63 4.15 -29.03 -0.12 1.51 15 10 C -0.50 -14.34 9.65 -34.44 -0.33 -14.67 15 11 H 0.07 2.22 7.98 -52.48 -0.42 1.80 15 12 C 0.06 1.85 5.47 -17.82 -0.10 1.75 15 13 N -0.91 -28.07 13.96 55.43 0.77 -27.29 15 14 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 17 H -0.26 -6.24 6.54 56.52 0.37 -5.87 15 18 H 0.08 1.38 8.14 -51.93 -0.42 0.95 15 19 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 20 H 0.08 1.38 7.24 -51.93 -0.38 1.00 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 0.74 7.50 -51.93 -0.39 0.35 15 24 H 0.42 6.86 8.19 -40.82 -0.33 6.53 15 25 H 0.39 4.69 8.09 -40.82 -0.33 4.36 15 26 H 0.02 0.56 6.30 -51.93 -0.33 0.23 15 27 H 0.01 0.17 7.03 -51.93 -0.36 -0.19 15 28 H 0.26 7.56 8.31 -40.82 -0.34 7.23 15 LS Contribution 242.35 15.07 3.65 3.65 Total: -1.00 -34.01 242.35 -5.08 -39.10 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.40 Total: 4.68 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.87 Total: -9.08 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 1.21 Total: -55.16 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.01 -5.08 -39.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144218.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.920 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds