Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.34328 * 126.44317 * 119.99639 * 4 2 1 6 6 N 1.34480 * 107.66585 * 180.02562 * 5 4 2 7 7 C 1.30256 * 108.70317 * 359.97438 * 6 5 4 8 8 C 1.50694 * 125.62176 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47159 * 90.02869 * 8 7 6 10 10 H 1.07998 * 119.99964 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00244 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99815 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99892 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47378 * 90.00085 * 13 11 9 15 15 H 1.48507 * 109.46841 * 210.00228 * 13 11 9 16 16 H 1.48497 * 109.47217 * 329.99966 * 13 11 9 17 17 O 1.33971 * 108.76123 * 359.73747 * 7 6 5 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.07999 * 126.16791 * 0.02562 * 5 4 2 26 26 H 1.08999 * 109.47345 * 210.02934 * 8 7 6 27 27 H 1.08997 * 109.47508 * 330.02768 * 8 7 6 28 28 H 0.97001 * 120.00079 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8077 -1.8071 1.2580 6 7 3.0276 -2.1191 2.5475 7 6 2.4133 -1.2498 3.2982 8 6 2.4059 -1.2412 4.8051 9 6 3.5638 -0.4183 5.3084 10 1 4.2373 0.0518 4.6071 11 6 3.7627 -0.2646 6.6641 12 7 2.9422 -0.8367 7.5180 13 14 5.1974 0.7560 7.2878 14 1 4.7693 2.1695 7.4422 15 1 5.6461 0.2284 8.6015 16 1 6.3175 0.6814 6.3158 17 8 1.7932 -0.3616 2.5099 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 3.1862 -2.3418 0.3994 26 1 1.4709 -0.8089 5.1615 27 1 2.4982 -2.2624 5.1748 28 1 3.0823 -0.7289 8.4718 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = -24.909059 kcal Electronic energy + Delta-G solvation = -11950.860807 eV Core-core repulsion = 9773.909657 eV Total energy + Delta-G solvation = -2176.951150 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.16810 -36.71018 -35.66471 -35.32905 -32.23730 -28.93386 -28.07106 -25.76281 -23.52963 -22.68118 -21.14692 -18.80129 -17.72060 -17.28274 -16.54175 -16.27577 -15.39435 -14.62924 -14.42369 -14.18666 -13.99814 -13.67187 -13.08189 -12.85603 -12.70162 -12.47819 -12.23974 -12.16927 -12.13295 -11.92482 -11.65509 -11.29363 -10.69587 -9.46799 -8.30649 -6.45378 0.62772 1.39499 1.41376 1.52825 1.84890 1.91611 2.38386 3.01981 3.42944 3.71795 3.97479 4.15703 4.20732 4.46720 4.75133 4.79208 4.89711 4.91843 5.02115 5.10935 5.11979 5.26684 5.31428 5.40745 5.48668 5.58311 5.92824 6.59473 6.98429 7.23032 8.79666 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.052101 B = 0.008572 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.293175 B = 3265.522271 C = 3424.562496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 C -0.147 4.147 4 C -0.066 4.066 5 C -0.061 4.061 6 N -0.528 5.528 7 C 0.212 3.788 8 C 0.113 3.887 9 C -0.543 4.543 10 H 0.050 0.950 11 C 0.016 3.984 12 N -0.921 5.921 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.270 1.270 17 O -0.215 6.215 18 H 0.096 0.904 19 H 0.040 0.960 20 H 0.057 0.943 21 H 0.132 0.868 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.210 0.790 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 3.474 -14.563 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.199 4.199 6 N -0.258 5.258 7 C 0.006 3.994 8 C 0.076 3.924 9 C -0.581 4.581 10 H 0.068 0.932 11 C -0.184 4.184 12 N -0.559 5.559 13 Si 0.798 3.202 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.195 1.195 17 O -0.102 6.102 18 H 0.114 0.886 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.150 0.850 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.227 0.773 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.654 2.977 -14.124 14.676 hybrid contribution 0.267 0.687 0.519 0.901 sum -2.387 3.664 -13.605 14.291 Atomic orbital electron populations 1.21867 0.92914 1.02496 1.02977 1.19960 0.96984 0.95969 0.89113 1.21875 1.01159 0.94446 1.02957 1.24270 1.03787 0.99444 0.84344 1.23623 1.02713 0.98593 0.94933 1.70437 1.23579 1.28296 1.03443 1.27088 0.91188 0.84341 0.96772 1.17644 0.98422 0.98815 0.77551 1.21097 1.11999 1.32563 0.92436 0.93204 1.25855 0.99535 0.96681 0.96361 1.70029 1.38650 1.44224 1.03034 0.85306 0.78424 0.78704 0.77779 1.19169 1.19717 1.19510 1.84390 1.59715 1.48672 1.17444 0.88563 0.94121 0.92434 0.85034 0.94224 0.92908 0.88434 0.77281 0.94805 0.93837 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.18 71.98 0.66 -2.31 15 2 C 0.00 -0.04 3.33 -11.54 -0.04 -0.08 15 3 C -0.15 -3.20 9.17 71.98 0.66 -2.54 15 4 C -0.07 -2.30 5.89 24.79 0.15 -2.16 15 5 C -0.06 -2.25 11.79 83.39 0.98 -1.27 15 6 N -0.53 -25.16 11.29 -303.83 -3.43 -28.59 15 7 C 0.21 10.70 7.53 88.34 0.67 11.37 15 8 C 0.11 6.36 5.60 29.10 0.16 6.53 15 9 C -0.54 -32.01 9.09 25.60 0.23 -31.77 15 10 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 11 C 0.02 0.89 5.46 84.66 0.46 1.35 15 12 N -0.92 -54.50 13.29 21.45 0.28 -54.21 15 13 Si 0.97 44.31 29.54 68.60 2.03 46.34 15 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 17 O -0.21 -9.69 10.78 -3.81 -0.04 -9.73 15 18 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 19 H 0.04 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.06 1.18 8.14 -2.38 -0.02 1.16 15 21 H 0.13 2.11 8.11 -2.39 -0.02 2.09 15 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.21 5.68 8.06 -2.91 -0.02 5.65 15 26 H 0.03 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.04 2.55 8.14 -2.39 -0.02 2.53 15 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -68.05 250.62 3.90 -64.14 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.13 Total: 2.93 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.93 Total: -20.89 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.15 Total: -82.80 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.04 Total: -9.73 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.05 3.90 -64.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.235 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds