Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34669 * 126.59177 * 2 1 4 4 C 1.50697 * 125.98868 * 0.22327 * 3 2 1 5 5 H 1.08993 * 109.47268 * 14.71658 * 4 3 2 6 6 N 1.46905 * 109.47106 * 134.72043 * 4 3 2 7 7 C 1.50705 * 109.46917 * 254.71705 * 4 3 2 8 8 H 1.08001 * 120.00070 * 359.97438 * 7 4 3 9 9 C 1.37884 * 119.99813 * 180.02562 * 7 4 3 10 10 N 1.31509 * 119.99527 * 179.97438 * 9 7 4 11 11 Si 1.86801 * 120.00015 * 359.97438 * 9 7 4 12 12 H 1.48499 * 109.47161 * 90.00069 * 11 9 7 13 13 H 1.48500 * 109.47059 * 210.00039 * 11 9 7 14 14 H 1.48498 * 109.46878 * 329.99944 * 11 9 7 15 15 N 1.34134 * 108.02026 * 179.97438 * 3 2 1 16 16 C 1.30493 * 109.25480 * 0.02562 * 15 3 2 17 17 N 1.35040 * 108.70593 * 359.97438 * 16 15 3 18 18 C 1.46500 * 126.40217 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.46708 * 90.00276 * 1 2 3 20 20 H 1.09000 * 109.47333 * 210.00276 * 1 2 3 21 21 H 1.08998 * 109.46960 * 330.00866 * 1 2 3 22 22 H 1.00900 * 110.99630 * 296.04013 * 6 4 3 23 23 H 1.00897 * 111.00050 * 59.99802 * 6 4 3 24 24 H 0.97006 * 119.99633 * 180.02562 * 10 9 7 25 25 H 1.08006 * 125.64594 * 180.02562 * 16 15 3 26 26 H 1.09002 * 109.47095 * 90.02083 * 18 17 16 27 27 H 1.09000 * 109.47063 * 210.02524 * 18 17 16 28 28 H 1.08994 * 109.46973 * 330.02127 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 6 1.8586 2.5191 0.0048 5 1 0.8024 2.5676 0.2692 6 7 2.6450 3.2758 0.9882 7 6 2.0613 3.1137 -1.3651 8 1 2.4758 2.5108 -2.1596 9 6 1.7186 4.4277 -1.6039 10 7 1.8960 4.9466 -2.7992 11 14 1.0024 5.4707 -0.2296 12 1 2.1024 6.1501 0.5009 13 1 0.0881 6.4890 -0.8061 14 1 0.2473 4.6022 0.7088 15 7 3.5813 0.6541 0.0006 16 6 3.5968 -0.6508 0.0004 17 7 2.3230 -1.0991 0.0002 18 6 1.8944 -2.5000 -0.0005 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8901 0.5137 22 1 2.4761 2.9374 1.9236 23 1 3.6285 3.2460 0.7648 24 1 1.6552 5.8712 -2.9671 25 1 4.4820 -1.2697 0.0011 26 1 1.7878 -2.8479 1.0270 27 1 0.9372 -2.5868 -0.5147 28 1 2.6392 -3.1075 -0.5144 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = 59.151293 kcal Electronic energy + Delta-G solvation = -12330.614367 eV Core-core repulsion = 10189.601099 eV Total energy + Delta-G solvation = -2141.013268 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.51932 -35.01795 -33.17192 -31.69897 -30.94419 -26.79844 -26.41365 -25.40955 -22.15494 -19.83789 -18.79932 -16.69074 -16.29913 -15.36834 -14.64312 -14.28099 -13.68355 -13.36281 -12.99634 -12.84917 -12.33938 -12.22854 -12.08069 -11.98597 -11.40996 -10.55793 -10.41864 -9.72454 -9.29896 -9.13362 -8.84168 -8.38298 -7.59638 -7.37251 -5.85186 -3.92450 2.55864 3.20173 3.66012 3.71865 3.84660 3.87456 4.78414 4.80678 5.11382 5.13827 5.22941 5.34405 5.44803 5.56170 5.91410 5.99160 6.24806 6.26341 6.36185 6.90135 7.11293 7.43830 7.70620 7.79791 8.38244 8.50514 8.79869 8.94046 9.17687 9.78402 11.25057 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.053178 B = 0.011140 C = 0.010918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.406964 B = 2512.844498 C = 2563.972986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.048 4.048 3 C 0.024 3.976 4 C 0.259 3.741 5 H 0.049 0.951 6 N -0.835 5.835 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.077 3.923 10 N -0.905 5.905 11 Si 0.937 3.063 12 H -0.280 1.280 13 H -0.321 1.321 14 H -0.275 1.275 15 N -0.479 5.479 16 C 0.159 3.841 17 N -0.470 5.470 18 C 0.078 3.922 19 H 0.070 0.930 20 H 0.051 0.949 21 H 0.081 0.919 22 H 0.305 0.695 23 H 0.342 0.658 24 H 0.261 0.739 25 H 0.195 0.805 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -13.787 7.448 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.161 4.161 3 C -0.107 4.107 4 C 0.148 3.852 5 H 0.067 0.933 6 N -0.364 5.364 7 C -0.542 4.542 8 H 0.086 0.914 9 C -0.125 4.125 10 N -0.543 5.543 11 Si 0.770 3.230 12 H -0.207 1.207 13 H -0.251 1.251 14 H -0.201 1.201 15 N -0.197 5.197 16 C -0.122 4.122 17 N -0.156 5.156 18 C -0.065 4.065 19 H 0.088 0.912 20 H 0.070 0.930 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.156 0.844 24 H 0.071 0.929 25 H 0.212 0.788 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.814 -12.634 7.096 14.603 hybrid contribution -0.360 -1.160 0.681 1.393 sum -2.175 -13.795 7.776 15.984 Atomic orbital electron populations 1.20110 0.87798 1.02141 1.02478 1.21040 0.94270 0.86436 1.14329 1.22105 0.87894 0.97858 1.02816 1.18094 0.93076 0.80915 0.93108 0.93314 1.59405 1.13724 1.59189 1.04039 1.20751 1.43281 0.97067 0.93087 0.91425 1.25018 0.94239 0.97683 0.95593 1.69974 1.48320 1.14360 1.21693 0.85857 0.77961 0.78220 0.80990 1.20671 1.25061 1.20063 1.70128 1.22927 1.07994 1.18678 1.24774 0.86832 0.92236 1.08376 1.45181 1.07390 1.06252 1.56815 1.21858 1.01970 0.80082 1.02619 0.91159 0.93009 0.90060 0.88426 0.84400 0.92946 0.78796 0.91376 0.90194 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.73 36.00 0.35 -0.69 15 2 C -0.05 -0.92 6.95 -81.60 -0.57 -1.48 15 3 C 0.02 0.55 5.84 -82.85 -0.48 0.06 15 4 C 0.26 6.46 2.49 -70.01 -0.17 6.29 15 5 H 0.05 1.22 5.89 -51.93 -0.31 0.91 15 6 N -0.84 -19.54 6.75 -6.65 -0.04 -19.58 15 7 C -0.50 -15.04 9.29 -34.44 -0.32 -15.36 15 8 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 9 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15 10 N -0.91 -29.05 13.96 55.43 0.77 -28.28 15 11 Si 0.94 24.77 26.03 -169.99 -4.42 20.34 15 12 H -0.28 -7.46 7.11 56.52 0.40 -7.06 15 13 H -0.32 -8.48 7.11 56.52 0.40 -8.07 15 14 H -0.28 -6.96 6.54 56.52 0.37 -6.59 15 15 N -0.48 -10.49 11.13 -10.87 -0.12 -10.62 15 16 C 0.16 2.73 12.56 -90.38 -1.14 1.59 15 17 N -0.47 -7.41 3.15 -121.37 -0.38 -7.80 15 18 C 0.08 0.77 10.87 59.85 0.65 1.42 15 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.05 0.63 7.87 -51.93 -0.41 0.22 15 21 H 0.08 1.29 7.03 -51.93 -0.37 0.92 15 22 H 0.31 6.26 9.06 -39.29 -0.36 5.90 15 23 H 0.34 8.18 8.87 -39.29 -0.35 7.83 15 24 H 0.26 7.88 8.31 -40.82 -0.34 7.54 15 25 H 0.20 2.44 8.06 -52.48 -0.42 2.02 15 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 15 27 H 0.08 0.72 7.81 -51.93 -0.41 0.31 15 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 240.29 15.07 3.62 3.62 Total: -1.00 -35.65 240.29 -5.82 -41.47 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.47 Total: 6.76 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.78 Total: -5.91 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: 0.23 Total: -66.28 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.42 Total: 20.34 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -35.65 -5.82 -41.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.623 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds