Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47226 * 2 1 4 4 C 1.50702 * 109.46982 * 180.02562 * 3 2 1 5 5 C 1.41382 * 128.00373 * 264.97691 * 4 3 2 6 6 N 1.30177 * 106.39320 * 180.29996 * 5 4 3 7 7 O 1.20925 * 111.60315 * 359.52864 * 6 5 4 8 8 C 1.34037 * 111.56669 * 0.49427 * 7 6 5 9 9 C 1.50703 * 126.77401 * 179.72936 * 8 7 6 10 10 C 1.50700 * 109.47111 * 269.96661 * 9 8 7 11 11 H 1.08003 * 119.99624 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00142 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99680 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99851 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47101 * 60.00336 * 14 12 10 16 16 H 1.48508 * 109.46796 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47509 * 299.99989 * 14 12 10 18 18 H 1.09000 * 109.47245 * 59.99664 * 1 2 3 19 19 H 1.09001 * 109.47651 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46852 * 299.99920 * 1 2 3 21 21 H 1.09007 * 109.46302 * 240.00365 * 2 1 3 22 22 H 1.09000 * 109.47245 * 120.00336 * 2 1 3 23 23 H 1.08999 * 109.47139 * 60.00256 * 3 2 1 24 24 H 1.09000 * 109.47283 * 300.00313 * 3 2 1 25 25 H 1.08002 * 126.80051 * 0.03015 * 5 4 3 26 26 H 1.08998 * 109.47157 * 29.97232 * 9 8 7 27 27 H 1.09005 * 109.46987 * 149.97323 * 9 8 7 28 28 H 0.97007 * 119.99817 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.4180 1.5397 1.1088 6 7 5.6281 1.5043 0.6301 7 8 5.6275 1.3933 -0.5740 8 6 4.3807 1.3499 -1.0642 9 6 3.9846 1.2227 -2.5126 10 6 3.8514 2.5956 -3.1195 11 1 4.0348 3.4726 -2.5164 12 6 3.4945 2.7322 -4.4442 13 7 3.2697 1.6643 -5.1781 14 14 3.3301 4.4341 -5.1965 15 1 4.6300 5.1456 -5.1001 16 1 2.9385 4.3087 -6.6235 17 1 2.2905 5.2009 -4.4640 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8932 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6767 1.9563 -0.8899 25 1 4.1354 1.6304 2.1472 26 1 4.7482 0.6603 -3.0501 27 1 3.0308 0.6999 -2.5839 28 1 3.0182 1.7603 -6.1100 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = 14.059355 kcal Electronic energy + Delta-G solvation = -12099.633057 eV Core-core repulsion = 9924.371705 eV Total energy + Delta-G solvation = -2175.261352 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.66036 -37.07924 -35.47905 -33.93333 -33.20327 -29.82596 -27.82445 -25.41107 -23.57171 -22.51179 -21.21063 -18.86344 -18.02639 -17.79634 -16.54419 -15.90800 -15.58934 -14.58808 -14.43176 -14.22964 -14.06453 -13.57373 -13.06610 -12.72131 -12.65726 -12.35475 -12.10599 -11.99771 -11.90670 -11.74324 -11.40261 -11.10407 -10.63536 -9.79843 -8.25973 -6.39458 0.69459 1.41603 1.44004 1.47736 1.53267 2.33555 2.43751 3.07581 3.53977 3.90327 4.04335 4.20763 4.33737 4.45025 4.70752 4.86939 4.92681 4.99539 5.09301 5.17097 5.17704 5.36234 5.44149 5.49244 5.53096 5.65043 6.01336 6.67613 7.29196 7.39536 8.83740 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.011998 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.286146 B = 2333.087060 C = 2922.343993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.033 4.033 4 C -0.225 4.225 5 C 0.009 3.991 6 N -0.408 5.408 7 O 0.053 5.947 8 C 0.002 3.998 9 C 0.100 3.900 10 C -0.539 4.539 11 H 0.052 0.948 12 C 0.017 3.983 13 N -0.921 5.921 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.265 1.265 18 H 0.046 0.954 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.225 0.775 26 H 0.017 0.983 27 H 0.047 0.953 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 -0.831 9.432 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.070 4.070 4 C -0.230 4.230 5 C -0.170 4.170 6 N -0.120 5.120 7 O -0.004 6.004 8 C -0.061 4.061 9 C 0.062 3.938 10 C -0.577 4.577 11 H 0.071 0.929 12 C -0.183 4.183 13 N -0.560 5.560 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.190 1.190 18 H 0.065 0.935 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.241 0.759 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.965 -0.849 9.754 10.563 hybrid contribution -0.551 0.627 -0.847 1.190 sum -4.516 -0.222 8.906 9.988 Atomic orbital electron populations 1.21734 0.94130 1.02250 1.02202 1.21459 0.96906 0.95406 1.01498 1.19897 0.85834 0.98122 1.03180 1.21378 0.99248 1.11467 0.90867 1.25403 0.87510 1.01336 1.02755 1.73771 1.24479 1.22051 0.91680 1.84721 1.30324 1.68764 1.16545 1.25244 0.82920 0.98500 0.99463 1.17697 0.96659 0.97754 0.81696 1.21142 1.48572 0.91797 0.96147 0.92923 1.25781 0.94225 1.01133 0.97137 1.70028 1.46766 1.30618 1.08548 0.85500 0.78941 0.79160 0.77507 1.19727 1.20181 1.19023 0.93491 0.91829 0.91072 0.94191 0.91080 0.88498 0.92199 0.75873 0.96473 0.93472 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.91 71.98 0.71 -2.60 15 2 C -0.12 -3.21 5.92 30.59 0.18 -3.02 15 3 C -0.03 -1.02 5.55 29.85 0.17 -0.85 15 4 C -0.23 -8.47 5.58 -19.73 -0.11 -8.58 15 5 C 0.01 0.30 12.16 85.71 1.04 1.35 15 6 N -0.41 -16.57 12.07 -59.25 -0.72 -17.28 15 7 O 0.05 2.41 11.20 71.66 0.80 3.22 15 8 C 0.00 0.08 6.68 25.04 0.17 0.24 15 9 C 0.10 5.16 5.39 29.10 0.16 5.32 15 10 C -0.54 -29.86 9.09 25.60 0.23 -29.62 15 11 H 0.05 2.92 7.74 -2.91 -0.02 2.89 15 12 C 0.02 0.94 5.46 84.65 0.46 1.40 15 13 N -0.92 -52.78 13.29 21.45 0.28 -52.50 15 14 Si 0.96 42.81 29.54 68.60 2.03 44.84 15 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 18 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.04 1.31 8.04 -2.38 -0.02 1.29 15 22 H 0.07 1.75 8.14 -2.39 -0.02 1.74 15 23 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.22 5.20 8.06 -2.91 -0.02 5.17 15 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 27 H 0.05 2.48 7.96 -2.38 -0.02 2.46 15 28 H 0.27 14.51 8.31 -92.70 -0.77 13.74 15 Total: -1.00 -61.11 250.25 6.54 -54.57 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.13 Total: 3.53 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 3.01 Total: -36.37 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -0.43 Total: -69.78 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.11 6.54 -54.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.630 kcal (2) G-P(sol) polarization free energy of solvation -61.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds