Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46732 * 124.33754 * 90.00417 * 10 9 7 12 12 C 1.54345 * 105.58626 * 197.01962 * 11 10 9 13 13 H 1.09005 * 115.67579 * 103.34540 * 12 11 10 14 14 C 1.53601 * 113.35588 * 241.96925 * 12 11 10 15 15 C 1.55706 * 86.82727 * 77.54822 * 14 12 11 16 16 C 1.53726 * 87.61109 * 24.53642 * 15 14 12 17 17 H 1.08992 * 116.04267 * 94.05398 * 16 15 14 18 18 C 1.34371 * 124.33935 * 269.69993 * 10 9 7 19 19 O 1.21286 * 124.89133 * 359.53719 * 18 10 9 20 20 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 23 23 H 1.09008 * 110.22152 * 316.04603 * 11 10 9 24 24 H 1.08998 * 110.22984 * 77.98673 * 11 10 9 25 25 H 1.08994 * 113.53922 * 191.71404 * 14 12 11 26 26 H 1.09005 * 113.53656 * 322.37317 * 14 12 11 27 27 H 1.09002 * 113.36495 * 269.87013 * 15 14 12 28 28 H 1.09000 * 113.74494 * 139.26256 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7409 -4.2418 1.2121 12 6 3.9865 -5.0290 0.7527 13 1 4.9474 -4.5690 0.9833 14 6 3.8718 -6.5424 0.9890 15 6 2.9580 -6.5824 -0.2711 16 6 3.6575 -5.2962 -0.7400 17 1 4.5055 -5.4303 -1.4114 18 6 2.6912 -4.1926 -1.1090 19 8 2.4011 -3.8748 -2.2429 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8904 23 1 3.0234 -3.4798 1.9387 24 1 2.0045 -4.9199 1.6434 25 1 4.8130 -7.0760 0.8579 26 1 3.3650 -6.8006 1.9189 27 1 1.9010 -6.4447 -0.0432 28 1 3.1419 -7.4390 -0.9196 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -13.463544 kcal Electronic energy + Delta-G solvation = -12352.745351 eV Core-core repulsion = 10176.290516 eV Total energy + Delta-G solvation = -2176.454835 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.74453 -36.76502 -34.51520 -32.50002 -28.41531 -27.47388 -25.47760 -23.65660 -22.57010 -19.08060 -18.70829 -16.60048 -16.26065 -15.27777 -14.85208 -14.22926 -13.96072 -13.72003 -12.74781 -12.32116 -12.17411 -11.98396 -11.57722 -11.29321 -11.21630 -10.86761 -10.69178 -10.38279 -10.16476 -10.07064 -9.63422 -8.73720 -8.46456 -7.65873 -6.07802 -4.13381 3.28573 3.34278 3.37348 3.42688 4.02058 4.40334 4.44671 4.70105 4.75112 4.92402 5.25604 5.30956 5.53890 5.68786 5.76022 5.82662 5.93128 5.97533 6.10522 6.35539 6.43984 6.99369 7.33947 7.58805 7.89664 8.18552 8.26768 8.86959 9.14277 9.53099 11.00094 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.059285 B = 0.009776 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.183654 B = 2863.502825 C = 2947.650258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.254 3.746 10 N -0.598 5.598 11 C 0.118 3.882 12 C -0.124 4.124 13 H 0.098 0.902 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.150 4.150 17 H 0.118 0.882 18 C 0.514 3.486 19 O -0.543 6.543 20 H 0.264 0.736 21 H 0.042 0.958 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 -11.119 4.479 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.136 3.864 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.143 4.143 13 H 0.117 0.883 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.172 4.172 17 H 0.136 0.864 18 C 0.300 3.700 19 O -0.421 6.421 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.348 -10.729 3.904 13.063 hybrid contribution 0.462 1.069 0.047 1.166 sum 6.809 -9.660 3.951 12.461 Atomic orbital electron populations 1.69945 1.06025 1.27049 1.50370 1.24957 0.94919 0.99339 0.94935 0.86398 0.80002 0.83140 0.77638 1.19748 1.20797 1.20883 1.21508 0.93567 0.90605 1.51215 0.92228 1.19234 0.86980 0.81764 0.98406 1.48549 1.45161 1.34126 1.05089 1.21737 0.93352 0.96274 0.89201 1.23547 0.99238 0.95954 0.95541 0.88327 1.23117 1.00030 0.94865 0.98148 1.23019 0.99543 0.96030 0.97037 1.23488 0.99830 0.96149 0.97695 0.86401 1.20407 0.81816 0.82820 0.84990 1.90642 1.62831 1.67209 1.21426 0.92670 0.94023 0.94733 0.90306 0.91861 0.89755 0.90802 0.89798 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.53 -15.34 9.39 -34.44 -0.32 -15.67 15 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 15 9 C 0.25 6.83 5.69 -5.19 -0.03 6.80 15 10 N -0.60 -13.32 2.91 -173.91 -0.51 -13.83 15 11 C 0.12 1.97 6.54 -3.21 -0.02 1.95 15 12 C -0.12 -1.69 5.29 -88.45 -0.47 -2.15 15 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 14 C -0.12 -1.29 7.67 -24.98 -0.19 -1.48 15 15 C -0.12 -1.50 7.27 -24.91 -0.18 -1.68 15 16 C -0.15 -2.38 5.00 -89.97 -0.45 -2.83 15 17 H 0.12 1.70 8.14 -51.93 -0.42 1.28 15 18 C 0.51 11.48 7.46 -10.89 -0.08 11.40 15 19 O -0.54 -14.61 17.58 5.55 0.10 -14.51 15 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.04 1.25 7.91 -51.93 -0.41 0.84 15 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.32 8.14 -51.92 -0.42 0.89 15 24 H 0.06 0.93 7.50 -51.93 -0.39 0.54 15 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.07 0.68 8.10 -51.93 -0.42 0.26 15 27 H 0.08 1.15 7.58 -51.93 -0.39 0.76 15 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -33.17 240.47 -6.61 -39.78 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -3.70 Total: -4.03 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.84 Total: -2.01 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.23 Total: -39.86 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.17 -6.61 -39.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.317 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds