Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46732 * 124.33754 * 90.00417 * 10 9 7 12 12 C 1.54345 * 105.58626 * 197.01962 * 11 10 9 13 13 H 1.09005 * 115.67579 * 103.34540 * 12 11 10 14 14 C 1.53601 * 113.35588 * 241.96925 * 12 11 10 15 15 C 1.55706 * 86.82727 * 77.54822 * 14 12 11 16 16 C 1.53726 * 87.61109 * 24.53642 * 15 14 12 17 17 H 1.08992 * 116.04267 * 94.05398 * 16 15 14 18 18 C 1.34371 * 124.33935 * 269.69993 * 10 9 7 19 19 O 1.21286 * 124.89133 * 359.53719 * 18 10 9 20 20 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 23 23 H 1.09008 * 110.22152 * 316.04603 * 11 10 9 24 24 H 1.08998 * 110.22984 * 77.98673 * 11 10 9 25 25 H 1.08994 * 113.53922 * 191.71404 * 14 12 11 26 26 H 1.09005 * 113.53656 * 322.37317 * 14 12 11 27 27 H 1.09002 * 113.36495 * 269.87013 * 15 14 12 28 28 H 1.09000 * 113.74494 * 139.26256 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7409 -4.2418 1.2121 12 6 3.9865 -5.0290 0.7527 13 1 4.9474 -4.5690 0.9833 14 6 3.8718 -6.5424 0.9890 15 6 2.9580 -6.5824 -0.2711 16 6 3.6575 -5.2962 -0.7400 17 1 4.5055 -5.4303 -1.4114 18 6 2.6912 -4.1926 -1.1090 19 8 2.4011 -3.8748 -2.2429 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8904 23 1 3.0234 -3.4798 1.9387 24 1 2.0045 -4.9199 1.6434 25 1 4.8130 -7.0760 0.8579 26 1 3.3650 -6.8006 1.9189 27 1 1.9010 -6.4447 -0.0432 28 1 3.1419 -7.4390 -0.9196 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260286591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -36.162746 kcal Electronic energy + Delta-G solvation = -12353.729662 eV Core-core repulsion = 10176.290516 eV Total energy + Delta-G solvation = -2177.439146 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.13980 -38.40667 -36.35920 -34.57061 -30.27338 -28.84667 -27.09188 -24.84202 -24.47652 -20.51287 -20.11655 -18.77750 -17.75463 -16.90673 -16.52059 -16.05857 -15.54463 -15.13549 -14.46702 -14.08065 -13.56617 -13.47447 -13.13441 -12.97906 -12.79513 -12.64027 -12.38934 -12.06907 -11.78986 -11.42721 -11.17416 -10.72398 -10.38871 -9.51838 -8.29306 -6.46087 1.34211 1.36745 1.49041 1.68990 2.28581 2.43517 2.99552 3.23221 3.54416 3.66789 3.85096 4.11393 4.37780 4.58086 4.67290 4.72229 4.84770 4.93210 5.02509 5.07391 5.16954 5.26987 5.44558 5.53537 5.83274 5.96939 6.51110 6.63300 7.19676 7.40571 8.78117 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.059285 B = 0.009776 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.183654 B = 2863.502825 C = 2947.650258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.053 0.947 9 C 0.267 3.733 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.113 4.113 13 H 0.115 0.885 14 C -0.095 4.095 15 C -0.118 4.118 16 C -0.151 4.151 17 H 0.136 0.864 18 C 0.492 3.508 19 O -0.606 6.606 20 H 0.270 0.730 21 H -0.006 1.006 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 -12.165 6.010 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.071 0.929 9 C 0.146 3.854 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.131 4.131 13 H 0.133 0.867 14 C -0.132 4.132 15 C -0.156 4.156 16 C -0.172 4.172 17 H 0.153 0.847 18 C 0.281 3.719 19 O -0.489 6.489 20 H 0.079 0.921 21 H 0.012 0.988 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.446 -11.812 5.485 15.523 hybrid contribution -0.253 1.381 -0.443 1.473 sum 8.192 -10.431 5.042 14.190 Atomic orbital electron populations 1.70056 1.07634 1.28435 1.50551 1.25924 0.95891 1.03275 0.94016 0.85271 0.78625 0.78108 0.78211 1.19160 1.20508 1.19007 1.21738 0.93368 0.91896 1.52035 0.92850 1.18717 0.87523 0.83392 0.95759 1.48613 1.44402 1.33117 1.07683 1.22103 0.95487 0.96796 0.86972 1.23617 0.98134 0.98269 0.93119 0.86655 1.23100 1.00845 0.91648 0.97584 1.23094 0.99004 0.94712 0.98769 1.23655 0.98975 0.95270 0.99340 0.84658 1.21731 0.82238 0.83930 0.83958 1.90582 1.65093 1.69414 1.23827 0.92121 0.98761 0.95310 0.90532 0.89643 0.86525 0.88742 0.91444 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.48 15 2 C 0.01 0.48 5.46 84.65 0.46 0.95 15 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.55 -32.94 9.39 25.60 0.24 -32.70 15 8 H 0.05 3.17 7.81 -2.91 -0.02 3.15 15 9 C 0.27 15.08 5.69 85.63 0.49 15.56 15 10 N -0.61 -27.84 2.91 -822.73 -2.40 -30.24 15 11 C 0.11 3.47 6.54 86.79 0.57 4.04 15 12 C -0.11 -2.68 5.29 -9.39 -0.05 -2.73 15 13 H 0.12 2.42 8.14 -2.38 -0.02 2.40 15 14 C -0.09 -1.46 7.67 31.73 0.24 -1.22 15 15 C -0.12 -2.61 7.27 31.77 0.23 -2.38 15 16 C -0.15 -4.50 5.00 -10.37 -0.05 -4.55 15 17 H 0.14 3.57 8.14 -2.39 -0.02 3.55 15 18 C 0.49 22.60 7.46 87.90 0.66 23.25 15 19 O -0.61 -34.44 17.58 -3.05 -0.05 -34.49 15 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 21 H -0.01 -0.37 7.91 -2.39 -0.02 -0.39 15 22 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.08 2.47 8.14 -2.38 -0.02 2.45 15 24 H 0.09 2.34 7.50 -2.39 -0.02 2.32 15 25 H 0.12 1.20 8.14 -2.39 -0.02 1.18 15 26 H 0.09 1.18 8.10 -2.38 -0.02 1.16 15 27 H 0.07 1.73 7.58 -2.39 -0.02 1.71 15 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -76.37 240.47 3.78 -72.58 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.14 Total: 0.97 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 2.79 Total: 0.21 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.11 Total: -86.73 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.05 Total: -34.49 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.37 3.78 -72.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.419 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds