Wall clock time and date at job start Mon Mar 30 2020 01:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00318 * 2 1 4 4 H 1.48499 * 109.47141 * 239.99662 * 3 2 1 5 5 H 1.48500 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47343 * 119.99634 * 3 2 1 7 7 C 1.37887 * 119.99454 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00404 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.49345 * 125.76413 * 270.00133 * 10 9 7 12 12 C 1.51838 * 101.49935 * 153.73764 * 11 10 9 13 13 H 1.09000 * 113.48658 * 287.16677 * 12 11 10 14 14 C 1.49813 * 129.71787 * 126.62422 * 12 11 10 15 15 C 1.56045 * 80.99144 * 229.83325 * 14 12 11 16 16 C 1.48934 * 80.78606 * 46.36931 * 15 14 12 17 17 H 1.08999 * 111.48573 * 68.43946 * 16 15 14 18 18 C 1.37123 * 125.76300 * 90.02558 * 10 9 7 19 19 O 1.21276 * 126.50310 * 351.31616 * 18 10 9 20 20 H 0.97009 * 119.99802 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46859 * 59.99921 * 9 7 2 22 22 H 1.09002 * 109.47293 * 300.00187 * 9 7 2 23 23 H 1.09002 * 111.02310 * 35.68340 * 11 10 9 24 24 H 1.08997 * 111.02023 * 271.79220 * 11 10 9 25 25 H 1.09001 * 114.58560 * 343.10612 * 14 12 11 26 26 H 1.09003 * 114.58241 * 116.92804 * 14 12 11 27 27 H 1.09002 * 114.45981 * 293.36141 * 15 14 12 28 28 H 1.09000 * 114.72502 * 159.37783 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.7700 -4.2762 -1.2113 12 6 4.0889 -4.8059 -0.6771 13 1 4.8323 -4.0274 -0.5058 14 6 4.6507 -6.1941 -0.7195 15 6 4.8577 -5.8930 0.7976 16 6 3.4549 -5.4153 0.6488 17 1 2.7693 -6.2418 0.4622 18 6 2.7232 -4.2223 1.1132 19 8 2.6005 -3.8531 2.2619 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6239 -2.5568 0.8903 23 1 2.9339 -3.5546 -2.0116 24 1 2.1287 -5.0911 -1.5472 25 1 3.9195 -6.9728 -0.9362 26 1 5.5738 -6.2924 -1.2909 27 1 5.5856 -5.1092 1.0069 28 1 4.9733 -6.7761 1.4259 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:25 Heat of formation + Delta-G solvation = 52.411527 kcal Electronic energy + Delta-G solvation = -12339.255202 eV Core-core repulsion = 10165.656925 eV Total energy + Delta-G solvation = -2173.598277 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.46164 -37.06109 -34.73258 -32.64760 -28.86261 -27.09246 -25.12048 -23.20340 -21.97745 -20.76369 -18.28882 -16.48564 -16.35396 -15.44782 -14.49999 -14.42220 -14.04068 -13.30867 -12.92986 -12.32067 -11.90556 -11.75975 -11.57585 -11.39468 -11.13686 -11.06763 -10.86748 -10.63225 -10.13272 -9.73001 -9.57744 -8.49510 -8.37392 -7.61963 -6.06367 -4.12060 3.26907 3.31608 3.35548 3.40091 3.68238 3.89759 4.42988 4.48384 4.80739 5.01748 5.26116 5.39021 5.43822 5.61298 5.71573 5.84677 5.90157 5.99702 6.09261 6.27799 6.42016 6.94699 7.31671 7.61697 7.90613 8.12858 8.20758 8.86696 9.11033 9.54174 11.01078 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.055226 B = 0.009773 C = 0.009595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.888346 B = 2864.284004 C = 2917.467722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.261 3.739 10 N -0.617 5.617 11 C 0.128 3.872 12 C -0.157 4.157 13 H 0.110 0.890 14 C -0.104 4.104 15 C -0.097 4.097 16 C -0.197 4.197 17 H 0.116 0.884 18 C 0.528 3.472 19 O -0.531 6.531 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -10.936 -4.187 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.143 3.857 10 N -0.352 5.352 11 C 0.005 3.995 12 C -0.175 4.175 13 H 0.128 0.872 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.218 4.218 17 H 0.134 0.866 18 C 0.315 3.685 19 O -0.408 6.408 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.247 -10.487 -3.587 13.242 hybrid contribution 0.285 1.074 -0.034 1.111 sum 7.532 -9.413 -3.621 12.588 Atomic orbital electron populations 1.69922 1.06019 1.27243 1.50318 1.24957 0.94917 0.99298 0.94966 0.86522 0.79512 0.82515 0.78683 1.20191 1.21107 1.20131 1.21470 0.93498 0.90715 1.51271 0.92402 1.19154 0.86689 0.81722 0.98115 1.50075 1.46014 1.34745 1.04330 1.21519 0.91738 0.96861 0.89345 1.23991 0.97770 0.97211 0.98567 0.87199 1.22701 1.00796 0.94700 0.96006 1.22511 0.94063 1.00903 0.96015 1.23086 0.97593 0.98559 1.02598 0.86613 1.19797 0.79453 0.84254 0.84969 1.90625 1.60415 1.70365 1.19400 0.92578 0.94691 0.94434 0.90214 0.91835 0.88873 0.91119 0.88967 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.53 -15.41 9.39 -34.44 -0.32 -15.73 15 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 15 9 C 0.26 7.02 5.92 -5.20 -0.03 6.99 15 10 N -0.62 -13.75 3.06 -174.01 -0.53 -14.28 15 11 C 0.13 2.11 7.17 -3.05 -0.02 2.09 15 12 C -0.16 -2.19 4.66 -104.14 -0.48 -2.68 15 13 H 0.11 1.65 7.58 -51.93 -0.39 1.26 15 14 C -0.10 -1.06 8.05 -43.25 -0.35 -1.41 15 15 C -0.10 -1.18 8.06 -41.84 -0.34 -1.52 15 16 C -0.20 -3.09 4.11 -108.46 -0.45 -3.53 15 17 H 0.12 1.60 7.41 -51.93 -0.38 1.21 15 18 C 0.53 11.76 7.78 -11.43 -0.09 11.67 15 19 O -0.53 -14.27 17.93 5.56 0.10 -14.17 15 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.04 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.08 1.32 8.14 -51.93 -0.42 0.89 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.09 0.82 7.50 -51.93 -0.39 0.43 15 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.09 1.15 7.58 -51.93 -0.39 0.75 15 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 240.76 15.07 3.63 3.63 Total: -1.00 -33.29 240.76 -6.91 -40.20 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.64 Total: -3.91 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.18 Total: -2.46 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.20 Total: -40.38 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.10 Total: -14.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.29 -6.91 -40.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.615 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds