Wall clock time and date at job start Mon Mar 30 2020 01:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00283 * 2 1 4 4 H 1.48505 * 109.47378 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47499 * 119.99560 * 3 2 1 7 7 C 1.37881 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99448 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99990 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.46705 * 124.33361 * 270.01901 * 10 9 7 12 12 C 1.54388 * 105.63901 * 196.87930 * 11 10 9 13 13 H 1.09000 * 115.74198 * 206.33442 * 12 11 10 14 14 C 1.53672 * 113.12021 * 66.88845 * 12 11 10 15 15 C 1.53676 * 87.50022 * 233.76342 * 14 12 11 16 16 C 1.53656 * 87.48891 * 24.97101 * 15 14 12 17 17 H 1.09014 * 116.71088 * 216.93270 * 16 15 14 18 18 C 1.34364 * 124.33211 * 90.02453 * 10 9 7 19 19 O 1.21283 * 124.85777 * 359.02252 * 18 10 9 20 20 H 0.97003 * 120.00406 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47247 * 59.99509 * 9 7 2 22 22 H 1.09000 * 109.46805 * 299.99451 * 9 7 2 23 23 H 1.08994 * 110.21749 * 315.92440 * 11 10 9 24 24 H 1.09004 * 110.21089 * 77.84137 * 11 10 9 25 25 H 1.08992 * 113.54782 * 348.42144 * 14 12 11 26 26 H 1.09002 * 113.54652 * 119.11075 * 14 12 11 27 27 H 1.09001 * 113.54741 * 270.31775 * 15 14 12 28 28 H 1.08998 * 113.54867 * 139.62200 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7409 -4.2414 -1.2109 12 6 3.3287 -5.5933 -0.7523 13 1 4.1349 -5.9923 -1.3680 14 6 2.2583 -6.5823 -0.2645 15 6 3.0675 -6.7126 1.0354 16 6 3.6346 -5.3148 0.7431 17 1 4.6795 -5.1456 1.0036 18 6 2.6950 -4.1890 1.1101 19 8 2.4276 -3.8509 2.2437 20 1 -0.4851 0.8400 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 1.9441 -4.4038 -1.9366 24 1 3.5235 -3.6177 -1.6431 25 1 1.2777 -6.1280 -0.1234 26 1 2.2184 -7.5029 -0.8467 27 1 3.8180 -7.5024 1.0039 28 1 2.4483 -6.7527 1.9316 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286602.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:28 Heat of formation + Delta-G solvation = -12.512611 kcal Electronic energy + Delta-G solvation = -12385.648844 eV Core-core repulsion = 10209.235245 eV Total energy + Delta-G solvation = -2176.413599 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.81625 -36.57062 -34.65804 -32.54744 -28.69137 -27.25060 -25.58646 -23.27035 -22.59599 -19.65513 -18.24708 -16.64088 -16.22953 -15.24204 -14.55250 -14.35964 -13.97934 -13.69986 -12.91610 -12.61100 -12.32040 -11.92437 -11.41650 -11.31477 -10.97026 -10.86401 -10.63025 -10.21913 -10.15945 -10.01469 -9.66598 -8.84705 -8.45820 -7.65434 -6.07247 -4.12899 3.31278 3.35372 3.37053 3.43676 4.03420 4.39145 4.44204 4.71965 4.77765 4.96937 5.25495 5.31642 5.57650 5.69797 5.78588 5.93656 6.00019 6.04059 6.15705 6.31537 6.53226 6.99508 7.33252 7.58698 7.89679 8.18749 8.26503 8.86486 9.13467 9.53332 11.00599 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.063569 B = 0.009698 C = 0.009531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.363519 B = 2886.573202 C = 2937.203120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.256 3.744 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.126 4.126 13 H 0.117 0.883 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.152 4.152 17 H 0.109 0.891 18 C 0.522 3.478 19 O -0.540 6.540 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -11.440 -3.828 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.137 3.863 10 N -0.329 5.329 11 C -0.012 4.012 12 C -0.144 4.144 13 H 0.135 0.865 14 C -0.170 4.170 15 C -0.154 4.154 16 C -0.174 4.174 17 H 0.127 0.873 18 C 0.308 3.692 19 O -0.418 6.418 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.415 -11.034 -3.253 12.715 hybrid contribution 0.532 1.070 -0.119 1.201 sum 5.947 -9.964 -3.372 12.084 Atomic orbital electron populations 1.69919 1.06025 1.27274 1.50184 1.24948 0.94919 0.99312 0.94902 0.86513 0.79500 0.82462 0.78696 1.20174 1.21101 1.20113 1.21432 0.93481 0.90667 1.51491 0.92369 1.19222 0.86907 0.81764 0.98364 1.48572 1.44817 1.34326 1.05138 1.21777 0.98643 0.92098 0.88732 1.23684 0.99185 0.95734 0.95846 0.86523 1.22862 0.98299 0.98998 0.96833 1.22606 0.99446 0.94818 0.98530 1.23272 1.00649 0.95743 0.97719 0.87323 1.20060 0.81005 0.83079 0.85081 1.90649 1.62444 1.67241 1.21458 0.92556 0.94738 0.94078 0.90928 0.91495 0.89726 0.91025 0.89551 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.53 -15.42 9.39 -34.44 -0.32 -15.74 15 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 15 9 C 0.26 6.85 5.68 -5.19 -0.03 6.82 15 10 N -0.60 -13.26 2.78 -173.95 -0.48 -13.74 15 11 C 0.11 1.86 6.84 -3.20 -0.02 1.84 15 12 C -0.13 -1.64 5.24 -88.40 -0.46 -2.11 15 13 H 0.12 1.16 8.14 -51.93 -0.42 0.74 15 14 C -0.13 -1.68 7.29 -26.03 -0.19 -1.87 15 15 C -0.12 -1.51 7.67 -26.04 -0.20 -1.71 15 16 C -0.15 -2.41 5.05 -90.07 -0.46 -2.87 15 17 H 0.11 1.57 8.14 -51.92 -0.42 1.15 15 18 C 0.52 11.60 6.99 -10.95 -0.08 11.52 15 19 O -0.54 -14.44 17.59 5.56 0.10 -14.34 15 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.04 1.23 7.93 -51.93 -0.41 0.82 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.08 1.26 7.73 -51.93 -0.40 0.86 15 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 241.03 15.07 3.63 3.63 Total: -1.00 -33.04 241.03 -6.63 -39.67 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.74 Total: -3.78 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.86 Total: -2.44 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.25 Total: -39.78 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.10 Total: -14.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.04 -6.63 -39.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286602.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.162 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds